fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-10-03 00:58:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

feat: diffexp returns two genesets (#2230)

Browse Source 
* feat: return two lists for diffexp (#2221)

* sp

* split out derive sort order, tests passing

* sp

* return diff exp results in two lists

* update

* copy implementation over to desktop

* add tests for two lists

* small fixes to complete backend implementation

* accept new diffexp response

* map diff exp response to genesets

* delete )

* name diffexp genesets with population names

* take constants out of state and allow width prop to override

* shorten mini-histo properly truncate and resize depending on expansion

* prepend new genesets

* rename data within diffexp action

* backend

* move diffexp ttest to common code module, update tests

* update for unit tests

* reference actual var

Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
Co-authored-by: Madison Dunitz <dunitzm@gmail.com>
This commit is contained in:
Severiano Badajoz
2021-06-08 21:02:19 +00:00
committed by GitHub
co-authored by Madison Dunitz Madison Dunitz
parent 7ed53c0f5b
commit 28b526b3fc
25 changed files with 268 additions and 284 deletions
Download Patch File Download Diff File Expand all files Collapse all files
backend/test/test_server/unit/data_anndata/test_anndata_adaptor.py
+5 -2
View File
@@ -153,9 +153,12 @@ class AdaptorTest(unittest.TestCase):
f1 = {"filter": {"obs": {"index": [[0, 500]]}}}
f2 = {"filter": {"obs": {"index": [[500, 1000]]}}}
result = json.loads(self.data.diffexp_topN(f1["filter"], f2["filter"]))
self.assertEqual(len(result), 10)
self.assertEqual(len(result['positive']), 10)
self.assertEqual(len(result['negative']), 10)
result = json.loads(self.data.diffexp_topN(f1["filter"], f2["filter"], 20))
self.assertEqual(len(result), 20)
self.assertEqual(len(result['positive']), 20)
self.assertEqual(len(result['negative']), 20)
def test_data_frame(self):
f1 = {"var": {"index": [[0, 10]]}}
backend/test/test_server/unit/data_anndata/test_anndata_adaptor_data_load.py
+4 -2
View File
@@ -31,9 +31,11 @@ class DataLoadAdaptorTest(unittest.TestCase):
f1 = {"filter": {"obs": {"index": [[0, 500]]}}}
f2 = {"filter": {"obs": {"index": [[500, 1000]]}}}
result = json.loads(self.data.diffexp_topN(f1["filter"], f2["filter"]))
self.assertEqual(len(result), 10)
self.assertEqual(len(result['positive']), 10)
self.assertEqual(len(result['negative']), 10)
result = json.loads(self.data.diffexp_topN(f1["filter"], f2["filter"], 20))
self.assertEqual(len(result), 20)
self.assertEqual(len(result['positive']), 20)
self.assertEqual(len(result['negative']), 20)
class DataLocatorAdaptorTest(unittest.TestCase):