feat: diffexp returns two genesets (#2230)

* feat: return two lists for diffexp (#2221)

* sp

* split out derive sort order, tests passing

* sp

* return diff exp results in two lists

* update

* copy implementation over to desktop

* add tests for two lists

* small fixes to complete backend implementation

* accept new diffexp response

* map diff exp response to genesets

* delete )

* name diffexp genesets with population names

* take constants out of state and allow width prop to override

* shorten mini-histo properly truncate and resize depending on expansion

* prepend new genesets

* rename data within diffexp action

* backend

* move diffexp ttest to common code module, update tests

* update for unit tests

* reference actual var

Co-authored-by: Madison Dunitz <madison.dunitz@chanzuckerberg.com>
Co-authored-by: Madison Dunitz <dunitzm@gmail.com>
This commit is contained in:
Severiano Badajoz
2021-06-08 21:02:19 +00:00
committed by GitHub
co-authored by Madison Dunitz Madison Dunitz
parent 7ed53c0f5b
commit 28b526b3fc
25 changed files with 268 additions and 284 deletions
+8 -5
View File
@@ -211,15 +211,18 @@ const requestDifferentialExpression = (set1, set2, num_genes = 50) => async (
const response = await res.json();
const varIndex = await annoMatrix.fetch("var", varIndexName);
const data = response.map((v) => [
varIndex.at(v[0], varIndexName),
...v.slice(1),
]);
const diffexpLists = { negative: [], positive: [] };
for (const polarity of Object.keys(diffexpLists)) {
diffexpLists[polarity] = response[polarity].map((v) => [
varIndex.at(v[0], varIndexName),
...v.slice(1),
]);
}
/* then send the success case action through */
return dispatch({
type: "request differential expression success",
data,
data: diffexpLists,
});
} catch (error) {
return dispatch({