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feat: add cli annotation subcommand (#2539)
add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
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@@ -46,10 +46,12 @@ jobs:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- name: Set up Python 3.7
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uses: actions/setup-python@v4
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- name: Set up Python 3.7 (pyenv) # pyenv needed for mlflow in cli annotate tests
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uses: gabrielfalcao/pyenv-action@v9
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with:
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python-version: 3.7
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default: 3.7
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command: pip install -U pip # upgrade pip after installing python
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- run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests
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- name: Python cache
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uses: actions/cache@v1
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with:
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