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feat: add cli annotation subcommand (#2539)

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add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
This commit is contained in:
Andrew Tolopko
2022-07-29 05:15:54 -07:00
committed by GitHub
parent d2b20129f7
commit 30e19e47c6
14 changed files with 388 additions and 5 deletions
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server/requirements.txt
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@@ -15,7 +15,7 @@ fsspec>=0.4.4,<0.8.0
gunicorn>=20.0.4
h5py>=3.0.0
numba>=0.51.2
numpy>=1.17.5
numpy>=1.17.5,<=1.22
packaging>=20.0
pandas>=1.0,!=1.1 # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446
PyYAML>=5.4 # CVE-2020-14343