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feat: add cli annotation subcommand (#2539)
add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
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@@ -9,6 +9,9 @@ with open("server/requirements.txt") as fh:
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with open("server/requirements-prepare.txt") as fh:
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requirements_prepare = fh.read().splitlines()
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with open("server/requirements-annotate.txt") as fh:
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requirements_annotate = fh.read().splitlines()
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setup(
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name="cellxgene",
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version="1.0.1",
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@@ -40,5 +43,5 @@ setup(
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"Topic :: Scientific/Engineering :: Bio-Informatics",
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],
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entry_points={"console_scripts": ["cellxgene = server.cli.cli:cli"]},
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extras_require=dict(prepare=requirements_prepare),
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extras_require=dict(prepare=requirements_prepare, annotate=requirements_annotate),
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)
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