feat: add cli annotation subcommand (#2539)

add `cellxgene annotate` subcommand for invoking MLflow model to generate new `obs` annotations, initially intended for cell type annotations.
This commit is contained in:
Andrew Tolopko
2022-07-29 05:15:54 -07:00
committed by GitHub
parent d2b20129f7
commit 30e19e47c6
14 changed files with 388 additions and 5 deletions
+4 -1
View File
@@ -9,6 +9,9 @@ with open("server/requirements.txt") as fh:
with open("server/requirements-prepare.txt") as fh:
requirements_prepare = fh.read().splitlines()
with open("server/requirements-annotate.txt") as fh:
requirements_annotate = fh.read().splitlines()
setup(
name="cellxgene",
version="1.0.1",
@@ -40,5 +43,5 @@ setup(
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
entry_points={"console_scripts": ["cellxgene = server.cli.cli:cli"]},
extras_require=dict(prepare=requirements_prepare),
extras_require=dict(prepare=requirements_prepare, annotate=requirements_annotate),
)