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clean up type inferencing (#2332)

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* unit tests for 64 bit conversion

* clean up type handling

* type inference tests

* more type inference fixes

* use schema to determine user intent for data typing

* stop using deprecated API

* fbs type encoding test

* add missing test

* add more tests

* correctly infer X type for CXG adaptor

* lint

* fix typo

* ts migration

* cleanup from PR review

* lint

* PR review changes
This commit is contained in:
Bruce Martin
2021-07-28 15:10:12 -07:00
committed by GitHub
parent 1140676106
commit 32f60a1547
15 changed files with 730 additions and 346 deletions
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backend/czi_hosted/data_cxg/cxg_adaptor.py
+3 -2
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@@ -210,7 +210,8 @@ class CxgAdaptor(DataAdaptor):
if lfc_cutoff is None:
lfc_cutoff = self.dataset_config.diffexp__lfc_cutoff
return diffexp_cxg.diffexp_ttest(
adaptor=self, maskA=maskA, maskB=maskB, top_n=top_n, diffexp_lfc_cutoff=lfc_cutoff)
adaptor=self, maskA=maskA, maskB=maskB, top_n=top_n, diffexp_lfc_cutoff=lfc_cutoff
)
def get_colors(self):
if self.cxg_version == "0.0":
@@ -357,7 +358,7 @@ class CxgAdaptor(DataAdaptor):
shape = self.get_shape()
dtype = self.get_X_array_dtype()
dataframe = {"nObs": shape[0], "nVar": shape[1], "type": dtype.name}
dataframe = {"nObs": shape[0], "nVar": shape[1], **get_schema_type_hint_from_dtype(dtype)}
annotations = {}
for ax in ("obs", "var"):