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clean up type inferencing (#2332)

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* unit tests for 64 bit conversion

* clean up type handling

* type inference tests

* more type inference fixes

* use schema to determine user intent for data typing

* stop using deprecated API

* fbs type encoding test

* add missing test

* add more tests

* correctly infer X type for CXG adaptor

* lint

* fix typo

* ts migration

* cleanup from PR review

* lint

* PR review changes
This commit is contained in:
Bruce Martin
2021-07-28 15:10:12 -07:00
committed by GitHub
parent 1140676106
commit 32f60a1547
15 changed files with 730 additions and 346 deletions
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backend/test/test_server/unit/data_anndata/test_anndata_adaptor.py
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@@ -36,6 +36,7 @@ Test the anndata adaptor using the pbmc3k data set.
(f"{PROJECT_ROOT}/example-dataset/pbmc3k.h5ad", True, "normal"),
(f"{FIXTURES_ROOT}/pbmc3k-CSC-gz.h5ad", True, "normal"),
(f"{FIXTURES_ROOT}/pbmc3k-CSR-gz.h5ad", True, "normal"),
(f"{FIXTURES_ROOT}/pbmc3k_64.h5ad", False, "auto"), # 64 bit conversion tests
],
)
class AdaptorTest(unittest.TestCase):