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move common code into server, update tests and makefile (#2425)

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* move common code into server, update tests and makefile

remove backend directory, refactor

update smoke tests
This commit is contained in:
Madison Dunitz
2021-09-20 18:50:06 -07:00
committed by GitHub
parent 97caa5bcaa
commit 3ebbb0ccbf
217 changed files with 277 additions and 292 deletions
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.github/workflows/compatibility_tests.yml
+5 -5
View File
@@ -41,8 +41,8 @@ jobs:
run: |
# 1. only install the dev requirements on top of what is in the cellxgene pip package
sudo apt-get update && sudo apt-get install -y libhdf5-serial-dev
sed -i 's/-r requirements.txt//' backend/server/requirements-dev.txt
pip install -r backend/server/requirements-dev.txt
sed -i 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
# 2. install cellxgene
make pydist install-dist
# 3. install anndata
@@ -71,8 +71,8 @@ jobs:
cd cellxgene
# 1. only install the dev requirements on top of what is in the cellxgene pip package
make dev-env-client
sed -i 's/-r requirements.txt//' backend/server/requirements-dev.txt
pip install -r backend/server/requirements-dev.txt
sed -i 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
# 2. install cellxgene
pip install --upgrade cellxgene
# 3. install anndata
@@ -99,7 +99,7 @@ jobs:
- name: Install dependencies
run: |
cd cellxgene
sed -i -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' backend/server/requirements.txt
sed -i -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' server/requirements.txt
make pydist install-dist dev-env
pip install git+https://github.com/theislab/anndata
- name: Tests
.github/workflows/push_tests.yml
+1 -1
View File
@@ -69,7 +69,7 @@ jobs:
- name: Unit tests
run: |
make unit-test-server unit-test-client
bash <(curl -s https://codecov.io/bash) -y .codecov.yml -k backend/server -cF backend,python,unitTest
bash <(curl -s https://codecov.io/bash) -y .codecov.yml -k server -cF server,python,unitTest
cd client && ./node_modules/codecov/bin/codecov --yml=../.codecov.yml --root=../ --gcov-root=../ -C -F frontend,javascript,unitTest
smoke-tests: