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chore: python 3.12

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This commit is contained in:
kaloster
2024-09-09 16:16:03 -04:00
parent eb743efd9a
commit 402b9b3f94
3 changed files with 12 additions and 12 deletions
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.github/workflows/compatibility_tests.yml
+5 -5
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@@ -7,9 +7,9 @@ on:
branches: branches:
- main - main
# For debug - uncomment below to run on all PRs ### For debugging purposes - uncomment below to run on all PRs
# pull_request: pull_request:
# branches: "*" branches: "*"
env: env:
JEST_ENV: prod JEST_ENV: prod
@@ -34,12 +34,12 @@ jobs:
matrix: matrix:
# note: The `macos-latest` is latest Catalina version, and not Big Sur. So we explicitly ask for Big Sur (`macos-11`) # note: The `macos-latest` is latest Catalina version, and not Big Sur. So we explicitly ask for Big Sur (`macos-11`)
os: [ubuntu-latest, macos-latest, macos-13] os: [ubuntu-latest, macos-latest, macos-13]
python-version: ["3.10", "3.11"] python-version: ["3.10", "3.11", "3.12"]
cellxgene_build: [main, latest] cellxgene_build: [main, latest]
# add anndata pinned version test for subset of matrix configurations, # add anndata pinned version test for subset of matrix configurations,
# in order to reduce matrix cross-product explosion # in order to reduce matrix cross-product explosion
include: include:
- python-version: 3.11 - python-version: 3.12
cellxgene_build: latest cellxgene_build: latest
# TODO: dynamically use the literal version in requirements.txt, # TODO: dynamically use the literal version in requirements.txt,
# to avoid having to update this in manually in the future # to avoid having to update this in manually in the future
.github/workflows/push_tests.yml
+6 -6
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@@ -17,10 +17,10 @@ jobs:
- uses: actions/checkout@v4 - uses: actions/checkout@v4
- run: | - run: |
git fetch --depth=1 origin +${{github.base_ref}} git fetch --depth=1 origin +${{github.base_ref}}
- name: Set up Python 3.11 - name: Set up Python 3.12
uses: actions/setup-python@v5 uses: actions/setup-python@v5
with: with:
python-version: 3.11 python-version: 3.12
- name: Node cache - name: Node cache
uses: actions/cache@v4 uses: actions/cache@v4
with: with:
@@ -46,10 +46,10 @@ jobs:
runs-on: ubuntu-latest runs-on: ubuntu-latest
steps: steps:
- uses: actions/checkout@v4 - uses: actions/checkout@v4
- name: Set up Python 3.11 (pyenv) # pyenv needed for mlflow in cli annotate tests - name: Set up Python 3.12 (pyenv) # pyenv needed for mlflow in cli annotate tests
uses: gabrielfalcao/pyenv-action@v9 uses: gabrielfalcao/pyenv-action@v9
with: with:
default: 3.11 default: 3.12
command: pip install -U pip # upgrade pip after installing python command: pip install -U pip # upgrade pip after installing python
- run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests - run: pip install virtualenv # virtualenv needed for mlflow in cli annotate tests
- name: Python cache - name: Python cache
@@ -79,10 +79,10 @@ jobs:
timeout-minutes: 20 timeout-minutes: 20
steps: steps:
- uses: actions/checkout@v4 - uses: actions/checkout@v4
- name: Set up Python 3.11 - name: Set up Python 3.12
uses: actions/setup-python@v5 uses: actions/setup-python@v5
with: with:
python-version: 3.11 python-version: 3.12
- name: Python cache - name: Python cache
uses: actions/cache@v4 uses: actions/cache@v4
with: with:
server/requirements.txt
+1 -1
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@@ -7,7 +7,7 @@ Flask-Cors>=3.0.9
Flask-RESTful>=0.3.6 Flask-RESTful>=0.3.6
flask-server-timing>=0.1.2 flask-server-timing>=0.1.2
flask-talisman>=0.7.0 flask-talisman>=0.7.0
flatbuffers>=1.11.0,<2.0.0 # cellxgene is not compatible with 2.0.0. Requires migration flatbuffers==2.0.7 # cellxgene is not compatible with 2.0.0. Requires migration
flatten-dict>=0.2.0 flatten-dict>=0.2.0
fsspec>0.8.0 fsspec>0.8.0
gunicorn>=20.0.4 gunicorn>=20.0.4