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Code Issues Packages Projects Releases Wiki Activity

TS typing for Dataframe (#2382)

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* initial TS typing

* first cut at Dataframe TS typing

* more Dataframe typing

* comments

* more Dataframe cleanup

* PR review fixes and improvements
This commit is contained in:
Bruce Martin
2021-08-17 10:43:40 -07:00
committed by GitHub
parent 3fdf5cac9d
commit 45cecad76a
39 changed files with 1298 additions and 1124 deletions
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client/__tests__/util/centroid.test.ts
+8 -8
View File
@@ -1,19 +1,19 @@
import cloneDeep from "lodash.clonedeep";
import { NumberArray } from "../../src/common/types/arraytypes";
import calcCentroid from "../../src/util/centroid";
import quantile from "../../src/util/quantile";
import { matrixFBSToDataframe } from "../../src/util/stateManager/matrix";
import * as REST from "./stateManager/sampleResponses";
import { indexEntireSchema } from "../../src/util/stateManager/schemaHelpers";
import { normalizeWritableCategoricalSchema } from "../../src/annoMatrix/normalize";
import { Dataframe } from "../../src/util/dataframe";
describe("centroid", () => {
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let schema: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let obsAnnotations: any;
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
let obsLayout: any;
let obsAnnotations: Dataframe;
let obsLayout: Dataframe;
beforeAll(() => {
schema = indexEntireSchema(cloneDeep(REST.schema.schema));
@@ -43,8 +43,8 @@ describe("centroid", () => {
// This expected result assumes that all cells belong in all categorical values inside of sample response
const expectedResult = [
quantile([0.5], obsLayout.col("umap_0").asArray())[0],
quantile([0.5], obsLayout.col("umap_1").asArray())[0],
quantile([0.5], obsLayout.col("umap_0").asArray() as NumberArray)[0],
quantile([0.5], obsLayout.col("umap_1").asArray() as NumberArray)[0],
];
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.
@@ -68,8 +68,8 @@ describe("centroid", () => {
// This expected result assumes that all cells belong in all categorical values inside of sample response
const expectedResult = [
quantile([0.5], obsLayout.col("umap_0").asArray())[0],
quantile([0.5], obsLayout.col("umap_1").asArray())[0],
quantile([0.5], obsLayout.col("umap_0").asArray() as NumberArray)[0],
quantile([0.5], obsLayout.col("umap_1").asArray() as NumberArray)[0],
];
// eslint-disable-next-line @typescript-eslint/no-explicit-any --- FIXME: disabled temporarily on migrate to TS.