fork/cellxgene
1
0
Fork 0
mirror of https://github.com/chanzuckerberg/cellxgene.git synced 2026-10-01 06:08:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

Handle schema v1.1.0 (#2002)

Browse Source 
Correctly display datasets that follow schema version 1.1.0
This commit is contained in:
Marcus Kinsella
2020-12-14 15:20:29 -08:00
committed by GitHub
parent 0b91371ea8
commit 46d02b1987
7 changed files with 132 additions and 9 deletions
Download Patch File Download Diff File Expand all files Collapse all files
server/converters/schema/schema_definitions/1_1_0.yaml
+93
View File
@@ -0,0 +1,93 @@
title: Corpora schema version 1.1.0
type: anndata
components:
uns:
type: dict
keys:
version:
type: dict
keys:
corpora_schema_version: null
corpora_encoding_version: null
title:
type: string
layer_descriptions:
type: dict
keys:
X: null
organism:
type: string
nullable: false
organism_ontology_term_id:
type: curie
prefixes:
- NCBITaxon
var:
type: dataframe
index:
type: human-readable string
unique: true
obs:
type: dataframe
index:
unique: true
columns:
tissue:
type: human-readable string
nullable: false
tissue_ontology_term_id:
type: suffixed curie
nullable: true
prefixes:
- UBERON
assay:
type: human-readable string
nullable: false
assay_ontology_term_id:
type: curie
nullable: true
prefixes:
- EFO
disease:
type: human-readable string
nullable: false
disease_ontology_term_id:
type: curie
nullable: true
prefixes:
- MONDO
- PATO
cell_type:
type: human-readable string
nullable: false
cell_type_ontology_term_id:
type: curie
nullable: true
prefixes:
- CL
- UBERON
sex:
type: string
enum:
- male
- female
- mixed
- unknown
- other
ethnicity:
type: human-readable string
nullable: false
ethnicity_ontology_term_id:
type: curie
nullable: true
prefixes:
- HANCESTRO
development_stage:
type: human-readable string
nullable: false
development_stage_ontology_term_id:
type: curie
nullable: true
prefixes:
- HsapDv
- EFO