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moved scanpy parser to scanpy class

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Charlotte Weaver
2018-08-07 16:37:02 -07:00
parent 0969854e9e
commit 499b9551f1
2 changed files with 13 additions and 3 deletions
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server/app/app.py
+6 -3
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@@ -63,8 +63,11 @@ def main():
"of the directory from the data_directory arg")
parser.add_argument("--port", help="Port to run server on.", type=int, default=5005)
subparsers = parser.add_subparsers(dest="cellxgene_command")
scanpy_subparser = subparsers.add_parser("scanpy", help="run cellxgene using the scanpy engine")
scanpy_subparser.add_argument("data_directory", metavar="dir", help="Directory containing data and schema file")
scanpy_subparser.set_defaults(func=run_scanpy)
try:
from .scanpy_engine.scanpy_engine import ScanpyEngine
ScanpyEngine.add_to_parser(subparsers, run_scanpy)
except ImportError:
print("Scanpy engine not available")
args = parser.parse_args()
args.func(args)