From 4d100d4507a8a3c24c2acebe0961a04c45282480 Mon Sep 17 00:00:00 2001 From: bmccandless Date: Thu, 21 May 2020 14:55:11 -0700 Subject: [PATCH] Upgrade to tiledb 2.0 (#1485) * Upgrade to tiledb 2.0 --- server/converters/cxgtool.py | 2 +- server/requirements.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/server/converters/cxgtool.py b/server/converters/cxgtool.py index 0f4a4c9f..6e5935f4 100644 --- a/server/converters/cxgtool.py +++ b/server/converters/cxgtool.py @@ -366,7 +366,7 @@ def create_emb(e_name, emb): dims = [] for d in range(emb.ndim): shape = emb.shape - dims.append(tiledb.Dim("", domain=(0, shape[d] - 1), tile=min(shape[d], 1000), dtype=np.uint32)) + dims.append(tiledb.Dim(domain=(0, shape[d] - 1), tile=min(shape[d], 1000), dtype=np.uint32)) domain = tiledb.Domain(*dims) schema = tiledb.ArraySchema( domain=domain, sparse=False, attrs=attrs, capacity=1_000_000, cell_order="row-major", tile_order="row-major" diff --git a/server/requirements.txt b/server/requirements.txt index 61ead7b5..f5658bd8 100644 --- a/server/requirements.txt +++ b/server/requirements.txt @@ -17,6 +17,6 @@ pandas>=0.24.2 PyYAML>=5.3 scipy>=1.3.0 requests>=2.22.0 -tiledb==0.5.9 +tiledb>=0.5.9,!=0.6.0 s3fs>=0.4.2 gunicorn>=20.0.4