mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-10-08 15:58:12 +08:00
Dunitz/czi hosted test server (#2254)
update hosted unit tests to use wsgi server instead of cellxgene packages
This commit is contained in:
Madison Dunitz
@@ -1,13 +1,12 @@
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import json
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import unittest
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import requests
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from backend.czi_hosted.common.config.app_config import AppConfig
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from backend.test.test_czi_hosted.unit import test_server
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from backend.test import FIXTURES_ROOT
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from backend.test.test_czi_hosted.unit import BaseTest
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class AuthTest(unittest.TestCase):
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class AuthTest(BaseTest):
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def setUp(self):
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self.dataset_dataroot = FIXTURES_ROOT
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@@ -18,13 +17,13 @@ class AuthTest(unittest.TestCase):
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app_config.update_default_dataset_config(user_annotations__enable=False)
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app_config.complete_config()
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with test_server(app_config=app_config) as server:
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session = requests.Session()
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config = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").json()
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self.assertNotIn("authentication", config["config"])
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self.assertIsNone(userinfo)
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server= self.create_app(app_config)
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server.testing = True
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session = server.test_client()
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config = json.loads(session.get(f"{self.TEST_URL_BASE}config").data)
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userinfo = json.loads(session.get(f"{self.TEST_URL_BASE}userinfo").data)
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self.assertNotIn("authentication", config["config"])
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self.assertIsNone(userinfo)
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def test_auth_session(self):
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app_config = AppConfig()
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@@ -33,14 +32,16 @@ class AuthTest(unittest.TestCase):
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app_config.update_default_dataset_config(user_annotations__enable=True)
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app_config.complete_config()
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with test_server(app_config=app_config) as server:
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session = requests.Session()
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config = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").json()
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server = self.create_app(app_config)
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server.auth.is_user_authenticated = lambda: True
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server.testing = True
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session = server.test_client()
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config = json.loads(session.get(f"{self.TEST_URL_BASE}config").data)
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userinfo = json.loads(session.get(f"{self.TEST_URL_BASE}userinfo").data)
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self.assertFalse(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "anonymous")
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self.assertFalse(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "anonymous")
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def test_auth_test(self):
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app_config = AppConfig()
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@@ -60,57 +61,59 @@ class AuthTest(unittest.TestCase):
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app_config.complete_config()
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with test_server(app_config=app_config) as server:
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session = requests.Session()
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server=self.create_app(app_config)
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server.testing = True
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session = server.test_client()
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# auth datasets
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config = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/userinfo").json()
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# auth datasets
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config = json.loads(session.get("/auth/pbmc3k.cxg/api/v0.2/config").data)
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userinfo = json.loads(session.get(f"/auth/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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login_uri = config["config"]["authentication"]["login"]
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logout_uri = config["config"]["authentication"]["logout"]
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login_uri = config["config"]["authentication"]["login"]
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logout_uri = config["config"]["authentication"]["logout"]
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self.assertEqual(login_uri, "/login?dataset=auth/pbmc3k.cxg")
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self.assertEqual(logout_uri, "/logout?dataset=auth/pbmc3k.cxg")
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self.assertEqual(login_uri, "/login?dataset=auth/pbmc3k.cxg")
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self.assertEqual(logout_uri, "/logout?dataset=auth/pbmc3k.cxg")
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r = session.get(f"{server}/{login_uri}")
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# check that the login redirect worked
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self.assertEqual(r.history[0].status_code, 302)
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self.assertEqual(r.url, f"{server}/auth/pbmc3k.cxg")
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response = session.get(login_uri)
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# check that the login redirect worked
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config = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/userinfo").json()
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "test_account")
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self.assertEqual(userinfo["userinfo"]["picture"], None)
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self.assertTrue(config["config"]["parameters"]["annotations"])
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self.assertEqual(response.status_code, 302)
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self.assertEqual(response.headers['Location'], 'http://localhost/auth/pbmc3k.cxg')
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config = json.loads(session.get("/auth/pbmc3k.cxg/api/v0.2/config").data)
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userinfo = json.loads(session.get("/auth/pbmc3k.cxg/api/v0.2/userinfo").data)
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r = session.get(f"{server}/{logout_uri}")
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# check that the logout redirect worked
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self.assertEqual(r.history[0].status_code, 302)
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self.assertEqual(r.url, f"{server}/auth/pbmc3k.cxg")
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config = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/userinfo").json()
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "test_account")
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self.assertEqual(userinfo["userinfo"]["picture"], None)
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self.assertTrue(config["config"]["parameters"]["annotations"])
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# no-auth datasets
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config = session.get(f"{server}/no-auth/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/no-auth/pbmc3k.cxg/api/v0.2/userinfo").json()
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self.assertIsNone(userinfo)
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self.assertFalse(config["config"]["parameters"]["annotations"])
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response = session.get(logout_uri)
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# check that the logout redirect worked
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# login with a picture
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session.get(f"{server}/{login_uri}&picture=myimage.png")
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userinfo = session.get(f"{server}/auth/pbmc3k.cxg/api/v0.2/userinfo").json()
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["picture"], "myimage.png")
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self.assertEqual(response.status_code, 302)
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config = json.loads(session.get("/auth/pbmc3k.cxg/api/v0.2/config").data)
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userinfo = json.loads(session.get("/auth/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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# no-auth datasets
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config = json.loads(session.get("/no-auth/pbmc3k.cxg/api/v0.2/config").data)
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userinfo = json.loads(session.get("/no-auth/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertIsNone(userinfo)
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self.assertFalse(config["config"]["parameters"]["annotations"])
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# login with a picture
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session.get(f"{login_uri}&picture=myimage.png")
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userinfo = json.loads(session.get("/auth/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["picture"], "myimage.png")
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def test_auth_test_single(self):
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app_config = AppConfig()
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@@ -122,38 +125,44 @@ class AuthTest(unittest.TestCase):
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app_config.complete_config()
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with test_server(app_config=app_config) as server:
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session = requests.Session()
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config = session.get(f"{server}/api/v0.2/config").json()
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userinfo = session.get(f"{server}/api/v0.2/userinfo").json()
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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server = self.create_app(app_config)
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server.testing = True
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session = server.test_client()
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login_uri = config["config"]["authentication"]["login"]
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logout_uri = config["config"]["authentication"]["logout"]
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config = json.loads(session.get("/api/v0.2/config").data)
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userinfo = json.loads(session.get("/api/v0.2/userinfo").data)
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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self.assertEqual(login_uri, "/login")
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self.assertEqual(logout_uri, "/logout")
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login_uri = config["config"]["authentication"]["login"]
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logout_uri = config["config"]["authentication"]["logout"]
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response = session.get(f"{server}/{login_uri}")
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# check that the login redirect worked
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self.assertEqual(response.history[0].status_code, 302)
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self.assertEqual(response.url, f"{server}/")
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self.assertEqual(login_uri, "/login")
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self.assertEqual(logout_uri, "/logout")
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config = session.get(f"{server}/api/v0.2/config").json()
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userinfo = session.get(f"{server}/api/v0.2/userinfo").json()
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "test_account")
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self.assertTrue(config["config"]["parameters"]["annotations"])
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response = session.get(f"{server}/{logout_uri}")
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# check that the logout redirect worked
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self.assertEqual(response.history[0].status_code, 302)
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self.assertEqual(response.url, f"{server}/")
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config = session.get(f"{server}/api/v0.2/config").json()
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userinfo = session.get(f"{server}/api/v0.2/userinfo").json()
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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# check that the login redirect worked
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with server.test_client() as session:
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response = session.get(login_uri)
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self.assertEqual(response.status_code, 302)
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self.assertEqual(response.headers['Location'], "http://localhost/")
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config = json.loads(session.get("api/v0.2/config").data)
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userinfo = json.loads(session.get("/api/v0.2/userinfo").data)
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "test_account")
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self.assertTrue(config["config"]["parameters"]["annotations"])
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response = session.get(logout_uri)
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# check that the logout redirect worked
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self.assertEqual(response.status_code, 302)
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self.assertEqual(response.headers['Location'], "http://localhost/")
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config = json.loads(session.get("/api/v0.2/config").data)
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userinfo = json.loads(session.get("/api/v0.2/userinfo").data)
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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@@ -10,7 +10,6 @@ from multiprocessing import Process
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import jose
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from backend.czi_hosted.common.config.app_config import AppConfig
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from backend.test.test_czi_hosted.unit import test_server
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from backend.test import FIXTURES_ROOT
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# This tests the oauth authentication type.
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@@ -20,6 +19,8 @@ from backend.test import FIXTURES_ROOT
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# oauth server.
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# number of seconds that the oauth token is valid
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from backend.test.test_czi_hosted.unit import BaseTest
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TOKEN_EXPIRES = 2
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# Create a mocked out oauth token, which servers all the endpoints needed by the oauth type.
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@@ -69,7 +70,7 @@ def launch_mock_oauth(mock_port):
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mock_oauth_app.run(port=mock_port)
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class AuthTest(unittest.TestCase):
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class AuthTest(BaseTest):
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@classmethod
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def setUpClass(cls):
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# The port that the mock oauth server will listen on
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@@ -119,90 +120,95 @@ class AuthTest(unittest.TestCase):
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app_config.update_server_config(multi_dataset__dataroot=self.dataset_dataroot)
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app_config.complete_config()
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with test_server(app_config=app_config) as server:
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session = requests.Session()
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server= self.create_app(app_config)
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server.testing = True
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session = server.test_client()
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# auth datasets
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config = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").json()
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# auth datasets
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config = json.loads(session.get("/d/pbmc3k.cxg/api/v0.2/config").data)
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userinfo = json.loads(session.get("/d/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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self.assertFalse(userinfo["userinfo"]["is_authenticated"])
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self.assertIsNone(userinfo["userinfo"]["username"])
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self.assertTrue(config["config"]["authentication"]["requires_client_login"])
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self.assertTrue(config["config"]["parameters"]["annotations"])
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login_uri = config["config"]["authentication"]["login"]
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logout_uri = config["config"]["authentication"]["logout"]
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login_uri = config["config"]["authentication"]["login"]
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logout_uri = config["config"]["authentication"]["logout"]
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self.assertEqual(login_uri, f"{server}/login?dataset=d/pbmc3k.cxg/")
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self.assertEqual(logout_uri, f"{server}/logout?dataset=d/pbmc3k.cxg/")
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self.assertEqual(login_uri, "http://localhost:5005/login?dataset=d/pbmc3k.cxg/")
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self.assertEqual(logout_uri, "http://localhost:5005/logout?dataset=d/pbmc3k.cxg/")
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r = session.get(login_uri)
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# check that the login redirect worked
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self.assertEqual(r.history[0].status_code, 302)
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self.assertEqual(r.url, f"{server}/d/pbmc3k.cxg/")
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config = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/config").json()
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userinfo = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").json()
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response = session.get(login_uri)
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# check that the login redirect worked
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self.assertEqual(response.status_code, 302)
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config = json.loads(session.get("/d/pbmc3k.cxg/api/v0.2/config").data)
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userinfo = json.loads(session.get("/d/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "fake_user")
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self.assertEqual(userinfo["userinfo"]["email"], "fake_user@email.com")
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self.assertTrue(config["config"]["parameters"]["annotations"])
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if cookie_key:
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cookie = session.cookies.get(cookie_key)
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token = json.loads(base64.b64decode(cookie))
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access_token_before = token.get("access_token")
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id_token_before = token.get("id_token")
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# let the token expire
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time.sleep(TOKEN_EXPIRES + 1)
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# check that refresh works
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session.get(login_uri)
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userinfo = json.loads(session.get(f"/d/pbmc3k.cxg/api/v0.2/userinfo").data)
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self.assertTrue(userinfo["userinfo"]["is_authenticated"])
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self.assertEqual(userinfo["userinfo"]["username"], "fake_user")
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self.assertEqual(userinfo["userinfo"]["email"], "fake_user@email.com")
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self.assertTrue(config["config"]["parameters"]["annotations"])
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if cookie_key:
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cookie = session.cookies.get(cookie_key)
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token = json.loads(base64.b64decode(cookie))
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access_token_before = token.get("access_token")
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id_token_before = token.get("id_token")
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cookie = session.cookies.get(cookie_key)
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token = json.loads(base64.b64decode(cookie))
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access_token_after = token.get("access_token")
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id_token_after = token.get("id_token")
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# let the token expire
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time.sleep(TOKEN_EXPIRES + 1)
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self.assertNotEqual(access_token_before, access_token_after)
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self.assertNotEqual(id_token_before, id_token_after)
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# check that refresh works
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session.get(login_uri)
|
||||
userinfo = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").json()
|
||||
self.assertTrue(userinfo["userinfo"]["is_authenticated"])
|
||||
self.assertEqual(userinfo["userinfo"]["username"], "fake_user")
|
||||
|
||||
cookie = session.cookies.get(cookie_key)
|
||||
token = json.loads(base64.b64decode(cookie))
|
||||
access_token_after = token.get("access_token")
|
||||
id_token_after = token.get("id_token")
|
||||
|
||||
self.assertNotEqual(access_token_before, access_token_after)
|
||||
self.assertNotEqual(id_token_before, id_token_after)
|
||||
|
||||
# invalid cookie is rejected
|
||||
session.cookies.set(cookie_key, "TEST_" + cookie)
|
||||
self.assertTrue(cookie_key in session.cookies)
|
||||
response = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo")
|
||||
# this is not an error, the invalid cookie is just ignored.
|
||||
self.assertEqual(response.status_code, 200)
|
||||
userinfo = response.json()
|
||||
self.assertFalse(userinfo["userinfo"]["is_authenticated"])
|
||||
self.assertIsNone(userinfo["userinfo"]["username"])
|
||||
|
||||
# invalid id_token is rejected
|
||||
test_token = token
|
||||
test_token["id_token"] = "TEST_" + id_token_after
|
||||
encoded_cookie = base64.b64encode(json.dumps(test_token).encode()).decode()
|
||||
session.cookies.set(cookie_key, encoded_cookie)
|
||||
response = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo")
|
||||
# this is not an error, the invalid id_token is just ignored.
|
||||
self.assertEqual(response.status_code, 200)
|
||||
userinfo = response.json()
|
||||
self.assertFalse(userinfo["userinfo"]["is_authenticated"])
|
||||
self.assertIsNone(userinfo["userinfo"]["username"])
|
||||
|
||||
r = session.get(logout_uri)
|
||||
# check that the logout redirect worked
|
||||
self.assertEqual(r.history[0].status_code, 302)
|
||||
self.assertEqual(r.url, f"{server}/d/pbmc3k.cxg/")
|
||||
config = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/config").json()
|
||||
userinfo = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").json()
|
||||
# invalid cookie is rejected
|
||||
session.cookies.set(cookie_key, "TEST_" + cookie)
|
||||
self.assertTrue(cookie_key in session.cookies)
|
||||
response = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo")
|
||||
# this is not an error, the invalid cookie is just ignored.
|
||||
self.assertEqual(response.status_code, 200)
|
||||
userinfo = json.loads(response.data)
|
||||
self.assertFalse(userinfo["userinfo"]["is_authenticated"])
|
||||
self.assertIsNone(userinfo["userinfo"]["username"])
|
||||
self.assertTrue(config["config"]["parameters"]["annotations"])
|
||||
|
||||
# invalid id_token is rejected
|
||||
test_token = token
|
||||
test_token["id_token"] = "TEST_" + id_token_after
|
||||
encoded_cookie = base64.b64encode(json.dumps(test_token).encode()).decode()
|
||||
session.cookies.set(cookie_key, encoded_cookie)
|
||||
response = session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo")
|
||||
# this is not an error, the invalid id_token is just ignored.
|
||||
self.assertEqual(response.status_code, 200)
|
||||
userinfo = json.loads(response.data)
|
||||
self.assertFalse(userinfo["userinfo"]["is_authenticated"])
|
||||
self.assertIsNone(userinfo["userinfo"]["username"])
|
||||
|
||||
r = session.get(logout_uri)
|
||||
# check that the logout redirect worked
|
||||
|
||||
self.assertEqual(r.history[0].status_code, 302)
|
||||
self.assertEqual(r.url, f"{server}/d/pbmc3k.cxg/")
|
||||
config = json.loads(session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/config").data)
|
||||
userinfo = json.loads(session.get(f"{server}/d/pbmc3k.cxg/api/v0.2/userinfo").data)
|
||||
self.assertFalse(userinfo["userinfo"]["is_authenticated"])
|
||||
self.assertIsNone(userinfo["userinfo"]["username"])
|
||||
self.assertTrue(config["config"]["parameters"]["annotations"])
|
||||
|
||||
@unittest.skip("turn on when we utilizing auth in the explorer")
|
||||
def test_auth_oauth_session(self):
|
||||
# test with session cookies
|
||||
app_config = AppConfig()
|
||||
@@ -210,6 +216,7 @@ class AuthTest(unittest.TestCase):
|
||||
app_config.update_server_config(authentication__params_oauth__session_cookie=True,)
|
||||
self.auth_flow(app_config)
|
||||
|
||||
@unittest.skip("turn on when we utilizing auth in the explorer")
|
||||
def test_auth_oauth_cookie(self):
|
||||
# test with specified cookie
|
||||
app_config = AppConfig()
|
||||
|
||||
Reference in New Issue
Block a user