mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-10-02 04:58:11 +08:00
Refactoring cxg utility classes in preparation for CXG conversion tooling (#1739)
This commit is contained in:
@@ -0,0 +1,40 @@
|
||||
import re
|
||||
|
||||
|
||||
def sanitize_values_in_list(list_of_keys: list):
|
||||
"""
|
||||
Returns a dictionary mapping of the old keys in the list of `list_of_keys` to its new, clean name that is both
|
||||
safe and unique.
|
||||
"""
|
||||
|
||||
if not all([isinstance(key, str) for key in list_of_keys]):
|
||||
raise Exception("List of keys to sanitize must contain all strings.")
|
||||
|
||||
# Mask out [~/.] and anything outside the ASCII range.
|
||||
mask = re.compile(r"[^ -\-0-\[\]-\}]")
|
||||
clean_keys_list = [mask.sub("_", key) for key in list_of_keys]
|
||||
|
||||
# Dedupe the clean keys list
|
||||
deduped_clean_keys_list = []
|
||||
for index, clean_key in enumerate(clean_keys_list):
|
||||
total_occurrences_of_clean_key = clean_keys_list.count(clean_key)
|
||||
total_occurrences_up_until_current_index = clean_keys_list[:index].count(clean_key)
|
||||
deduped_clean_keys_list.append(
|
||||
clean_key + "_" + str(total_occurrences_up_until_current_index + 1)
|
||||
if total_occurrences_of_clean_key > 1
|
||||
else clean_key
|
||||
)
|
||||
|
||||
return dict(zip(list_of_keys, deduped_clean_keys_list))
|
||||
|
||||
|
||||
def sanitize_keys_in_dictionary(dict_to_sanitize: dict):
|
||||
"""
|
||||
Clean and dedupe the keys in the given dictionary.
|
||||
"""
|
||||
|
||||
clean_keys = sanitize_values_in_list(dict_to_sanitize.keys())
|
||||
for original_key, sanitized_key in clean_keys.items():
|
||||
if original_key != sanitized_key:
|
||||
dict_to_sanitize[sanitized_key] = dict_to_sanitize[original_key]
|
||||
del dict_to_sanitize[original_key]
|
||||
Reference in New Issue
Block a user