From 517e0f382692c55900f7538c87cbd0dae865e831 Mon Sep 17 00:00:00 2001 From: Sidney Bell Date: Mon, 2 Dec 2019 09:26:07 -0800 Subject: [PATCH] [docs] Fix annotations command --- docs/posts/annotations.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/posts/annotations.md b/docs/posts/annotations.md index 81147899..4823180a 100644 --- a/docs/posts/annotations.md +++ b/docs/posts/annotations.md @@ -27,7 +27,7 @@ If you quit cellxgene and relaunch it with the same h5ad, we will check for this If you'd like to specify the complete file path for your annotations, you can do so by running: ``` -cellxgene launch mydata.h5ad --experimental-annotations-file path/to/myfile.csv +cellxgene launch mydata.h5ad --experimental-annotations --experimental-annotations-file path/to/myfile.csv ``` If this file already exists and contains compatible annotations, these annotations will be loaded as editable categories that you can update directly. Compatible annotations are tabular, with category names as column headers; `anndata.obs.index` as the index; and categorical values (i.e., fewer unique values per column than specified in `--max-category-items`, default 1000). @@ -44,7 +44,7 @@ As described in the [hosted](hosted) section, we do not officially support hoste To specify an output directory, run: ``` -cellxgene launch mydata.h5ad --experimental-annotations-output-dir path/to/annotations-directory/ +cellxgene launch mydata.h5ad --experimental-annotations --experimental-annotations-output-dir path/to/annotations-directory/ ``` For each user, annotations will be saved as follows: