Add backend endpoint

This commit is contained in:
Emanuele Bezzi
2021-12-01 12:02:45 -05:00
parent 853976b716
commit 54d4de431c
4 changed files with 48 additions and 1 deletions
+37 -1
View File
@@ -5,7 +5,7 @@ from http import HTTPStatus
import zlib
import json
from flask import make_response, jsonify, current_app, abort
from flask import make_response, jsonify, current_app, abort, send_file
from werkzeug.urls import url_unquote
from server.common.config.client_config import get_client_config
@@ -397,3 +397,39 @@ def summarize_var_post(request, data_adaptor):
key = request.args.get("key", default=None)
return summarize_var_helper(request, data_adaptor, key, request.get_data())
def spatial_image_get(request, data_adaptor):
import io
import matplotlib.pyplot
resolution = "hires"
spatial = data_adaptor.get_spatial()
if len(list(spatial)) == 0:
return abort_and_log(HTTPStatus.BAD_REQUEST, "uns does not have spatial information")
library_id = list(spatial)[0]
if len(spatial) > 1:
current_app.logger.warning(f"More than one library found under uns.spatial, using library '{library_id}'")
if "images" not in spatial[library_id]:
return abort_and_log(HTTPStatus.BAD_REQUEST, "spatial information does not contain images")
if resolution not in spatial[library_id]["images"]:
return abort_and_log(HTTPStatus.BAD_REQUEST, f"spatial information does not contain requested resolution '{resolution}'")
response_image = io.BytesIO()
matplotlib.pyplot.imsave(response_image, spatial[library_id]["images"][resolution])
response_image.seek(0)
try:
return send_file(response_image, attachment_filename=f"{library_id}-{resolution}.png", mimetype="image/png")
except (KeyError, DatasetAccessError) as e:
return abort_and_log(HTTPStatus.BAD_REQUEST, str(e), include_exc_info=True)
except PrepareError:
return abort_and_log(
HTTPStatus.NOT_IMPLEMENTED,
f"No spatial image available {request.path}",
loglevel=logging.ERROR,
include_exc_info=True,
)