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Code Issues Packages Projects Releases Wiki Activity

Flatbuffer cleanup (#598)

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* dead code and route removal

* more dead code cleanup

* fix scanpy_engine tests

* lint

* add missing catch in filter parsing

* update scanpy NaN tests

* more fbs tests and dead test removal

* remove forced default for content type negotiation

* bit of cleanup

* more fbs test cleanup

* lint

* remove swagger

* swagger cleanup

* lint

* correctly handle lack of templates

* more dead code removal

* remove unused files

* fix dev build

* lint
This commit is contained in:
Bruce Martin
2019-02-19 08:50:29 -08:00
committed by GitHub
parent 4e67c645f8
commit 57c4e9ff33
16 changed files with 210 additions and 1663 deletions
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server/test/test_nan_rest.py
+29 -6
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@@ -2,6 +2,9 @@ from http import HTTPStatus
from subprocess import Popen
import unittest
import time
import math
import decode_fbs
import requests
@@ -43,9 +46,29 @@ class WithNaNs(unittest.TestCase):
result = self.session.get(url)
self.assertEqual(result.status_code, HTTPStatus.OK)
def test_errors(self):
endpoints = ["annotations/obs", "annotations/var", "data/obs", "data/var"]
for endpoint in endpoints:
url = f"{URL_BASE}{endpoint}"
result = self.session.get(url)
self.assertEqual(result.status_code, HTTPStatus.INTERNAL_SERVER_ERROR)
def test_data(self):
endpoint = "data/var"
url = f"{URL_BASE}{endpoint}"
result = self.session.put(url)
self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
df = decode_fbs.decode_matrix_FBS(result.content)
self.assertTrue(math.isnan(df["columns"][3][3]))
def test_annotation_obs(self):
endpoint = "annotations/obs"
url = f"{URL_BASE}{endpoint}"
result = self.session.get(url)
self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
df = decode_fbs.decode_matrix_FBS(result.content)
self.assertTrue(math.isnan(df["columns"][2][0]))
def test_annotation_var(self):
endpoint = "annotations/var"
url = f"{URL_BASE}{endpoint}"
result = self.session.get(url)
self.assertEqual(result.status_code, HTTPStatus.OK)
self.assertEqual(result.headers["Content-Type"], "application/octet-stream")
df = decode_fbs.decode_matrix_FBS(result.content)
self.assertTrue(math.isnan(df["columns"][2][0]))