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Auto format python, make sure it passes lint checks (#1401)

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This commit is contained in:
Matt Weiden
2020-04-16 08:07:10 -07:00
committed by GitHub
parent 7e7ed74b92
commit 58e4c2489b
12 changed files with 66 additions and 78 deletions
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server/test/test_anndata_adaptor.py
+1 -1
View File
@@ -42,7 +42,7 @@ class AdaptorTest(unittest.TestCase):
"adaptor__anndata_adaptor__backed": self.backed,
"single_dataset__datapath": self.data_locator,
"limits__diffexp_cellcount_max": None,
"limits__column_request_max": None
"limits__column_request_max": None,
}
config = AppConfig()
config.update(**args)
server/test/test_filter.py
+31 -35
View File
@@ -15,50 +15,46 @@ class FilterParseTests(unittest.TestCase):
def test_queryparam_to_filter_parse(self):
# categories
self.assertEqual(_query_parameter_to_filter(_qsparse("obs:foo=bar&var:baz=133&var:baz=A&obs:baz=foo")), {
"obs": {
"annotation_value": [
{"name": "foo", "values": ["bar"]},
{"name": "baz", "values": ["foo"]},
]
self.assertEqual(
_query_parameter_to_filter(_qsparse("obs:foo=bar&var:baz=133&var:baz=A&obs:baz=foo")),
{
"obs": {"annotation_value": [{"name": "foo", "values": ["bar"]}, {"name": "baz", "values": ["foo"]}]},
"var": {"annotation_value": [{"name": "baz", "values": ["133", "A"]}]},
},
"var": {
"annotation_value": [
{"name": "baz", "values": ["133", "A"]}
]
}
})
)
# ranges
self.assertEqual(_query_parameter_to_filter(_qsparse("obs:A=1,99&obs:B=*,100&obs:C=0,*")), {
"obs": {
"annotation_value": [
{"name": "A", "min": 1, "max": 99.},
{"name": "B", "max": 100.},
{"name": "C", "min": 0.},
]
self.assertEqual(
_query_parameter_to_filter(_qsparse("obs:A=1,99&obs:B=*,100&obs:C=0,*")),
{
"obs": {
"annotation_value": [
{"name": "A", "min": 1, "max": 99.0},
{"name": "B", "max": 100.0},
{"name": "C", "min": 0.0},
]
},
},
})
)
# combo
self.assertEqual(_query_parameter_to_filter(_qsparse("var:B=YES&var:A=1,99&var:B=NO")), {
"var": {
"annotation_value": [
{"name": "B", "values": ["YES", "NO"]},
{"name": "A", "min": 1., "max": 99.},
]
self.assertEqual(
_query_parameter_to_filter(_qsparse("var:B=YES&var:A=1,99&var:B=NO")),
{
"var": {
"annotation_value": [
{"name": "B", "values": ["YES", "NO"]},
{"name": "A", "min": 1.0, "max": 99.0},
]
},
},
})
)
def test_queryparam_to_filter_escaping(self):
self.assertEqual(_query_parameter_to_filter(_qsparse("obs:var=%2521%252C%253AOK%253D&obs:A%2521=YO")), {
"obs": {
"annotation_value": [
{"name": "var", "values": ["!,:OK="]},
{"name": "A!", "values": ["YO"]},
],
},
})
self.assertEqual(
_query_parameter_to_filter(_qsparse("obs:var=%2521%252C%253AOK%253D&obs:A%2521=YO")),
{"obs": {"annotation_value": [{"name": "var", "values": ["!,:OK="]}, {"name": "A!", "values": ["YO"]}]}},
)
def test_queryparam_to_filter_errors(self):