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initial support for corpora schema conventions (#1676)
* initial support for corpora schema conventions * remove debugging print * add corpora util module * tests * lint * PR review edits * PR changes * more PR changes * more PR chnages * PR fixes * formatting * PR updates * lint * PR review
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@@ -17,6 +17,7 @@ from server.common.constants import Axis, MAX_LAYOUTS
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from server.common.errors import PrepareError, DatasetAccessError, FilterError
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from server.compute.scanpy import scanpy_umap
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import server.compute.diffexp_generic as diffexp_generic
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from server.common.corpora import corpora_get_props_from_anndata
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anndata_version = version.parse(str(anndata.__version__)).release
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@@ -57,6 +58,9 @@ class AnndataAdaptor(DataAdaptor):
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def open(data_locator, app_config, dataset_config=None):
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return AnndataAdaptor(data_locator, app_config, dataset_config)
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def get_corpora_props(self):
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return corpora_get_props_from_anndata(self.data)
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def get_name(self):
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return "cellxgene anndata adaptor version"
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