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fix: Handle non-categorical columns with colors + update deprecated AnnData API (#2758)

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Yeah that makes sense! Mergingg
This commit is contained in:
rwbaber
2026-02-24 13:37:57 -08:00
committed by GitHub
parent 7c7203bdfe
commit 5eb3021752
4 changed files with 11 additions and 10 deletions
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server/cli/prepare.py
+4 -4
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@@ -128,12 +128,12 @@ def prepare(
raise click.FileError(data, hint="not a valid file or path")
if not set_obs_names == "":
if set_obs_names not in adata.obs_keys():
raise click.UsageError(f"obs {set_obs_names} not found, options are: {adata.obs_keys()}")
if set_obs_names not in list(adata.obs.keys()):
raise click.UsageError(f"obs {set_obs_names} not found, options are: {list(adata.obs.keys())}")
adata.obs_names = adata.obs[set_obs_names]
if not set_var_names == "":
if set_var_names not in adata.var_keys():
raise click.UsageError(f"var {set_var_names} not found, options are: {adata.var_keys()}")
if set_var_names not in list(adata.var.keys()):
raise click.UsageError(f"var {set_var_names} not found, options are: {list(adata.var.keys())}")
adata.var_names = adata.var[set_var_names]
if make_obs_names_unique:
adata.obs.index = make_index_unique(adata.obs.index)