removed --diffexp cli param (#826)

This commit is contained in:
Charlotte Weaver
2019-06-26 14:46:58 -07:00
committed by GitHub
parent df1109e920
commit 5effe4bbbb
6 changed files with 1 additions and 18 deletions
+1 -4
View File
@@ -28,7 +28,6 @@ class CXGDriver(metaclass=ABCMeta):
def _get_default_config():
return {
"layout": None,
"diffexp": None,
"max_category_items": None,
"diffexp_lfc_cutoff": None
}
@@ -38,14 +37,12 @@ class CXGDriver(metaclass=ABCMeta):
features = {
"cluster": {"available": False},
"layout": {"obs": {"available": False}, "var": {"available": False}},
"diffexp": {"available": False},
"diffexp": {"available": True, "interactiveLimit": 50000}
}
# TODO - Interactive limit should be generated from the actual available methods see GH issue #94
if self.config["layout"]:
# TODO handle "var" when gene layout becomes available
features["layout"]["obs"] = {"available": True, "interactiveLimit": 50000}
if self.config["diffexp"]:
features["diffexp"] = {"available": True, "interactiveLimit": 50000}
return features
@abstractmethod
@@ -43,7 +43,6 @@ class ScanpyEngine(CXGDriver):
def _get_default_config():
return {
"layout": [],
"diffexp": "ttest",
"max_category_items": 100,
"obs_names": None,
"var_names": None,