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https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-30 18:08:12 +08:00
removed --diffexp cli param (#826)
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@@ -28,7 +28,6 @@ class CXGDriver(metaclass=ABCMeta):
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def _get_default_config():
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return {
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"layout": None,
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"diffexp": None,
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"max_category_items": None,
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"diffexp_lfc_cutoff": None
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}
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@@ -38,14 +37,12 @@ class CXGDriver(metaclass=ABCMeta):
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features = {
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"cluster": {"available": False},
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"layout": {"obs": {"available": False}, "var": {"available": False}},
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"diffexp": {"available": False},
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"diffexp": {"available": True, "interactiveLimit": 50000}
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}
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# TODO - Interactive limit should be generated from the actual available methods see GH issue #94
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if self.config["layout"]:
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# TODO handle "var" when gene layout becomes available
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features["layout"]["obs"] = {"available": True, "interactiveLimit": 50000}
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if self.config["diffexp"]:
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features["diffexp"] = {"available": True, "interactiveLimit": 50000}
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return features
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@abstractmethod
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@@ -43,7 +43,6 @@ class ScanpyEngine(CXGDriver):
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def _get_default_config():
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return {
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"layout": [],
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"diffexp": "ttest",
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"max_category_items": 100,
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"obs_names": None,
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"var_names": None,
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