removed --diffexp cli param (#826)

This commit is contained in:
Charlotte Weaver
2019-06-26 14:46:58 -07:00
committed by GitHub
parent df1109e920
commit 5effe4bbbb
6 changed files with 1 additions and 18 deletions
-10
View File
@@ -28,14 +28,6 @@ BIG_FILE_SIZE_THRESHOLD = 100 * 2**20 # 100MB
show_default=True,
help="Layout name, eg, 'umap'."
)
@click.option(
"--diffexp",
"-d",
type=click.Choice(["ttest"]),
default="ttest",
show_default=True,
help="Method for differential expression.",
)
@click.option("--title", "-t", help="Title to display (if omitted will use file name).", metavar="")
@click.option(
"--verbose",
@@ -83,7 +75,6 @@ BIG_FILE_SIZE_THRESHOLD = 100 * 2**20 # 100MB
def launch(
data,
layout,
diffexp,
title,
verbose,
debug,
@@ -181,7 +172,6 @@ security risk by including the --scripts flag. Make sure you trust the scripts t
args = {
"layout": layout,
"diffexp": diffexp,
"max_category_items": max_category_items,
"diffexp_lfc_cutoff": diffexp_lfc_cutoff,
"obs_names": obs_names,