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chore: upgrade backend dependencies (#2641)

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chore: upgrade backend dependencies (#2641)
This commit is contained in:
atarashansky
2023-11-29 14:16:39 -08:00
committed by GitHub
parent 4bb9a2b834
commit 6505f6cbf5
36 changed files with 161 additions and 315 deletions
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server/common/compute/diffexp_generic.py
+1 -1
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@@ -56,7 +56,7 @@ def diffexp_ttest_from_mean_var(meanA, varA, nA, meanB, varB, nB, top_n, diffexp
# degrees of freedom for Welch's t-test
with np.errstate(divide="ignore", invalid="ignore"):
dof = sum_vn ** 2 / (vnA ** 2 / (nA - 1) + vnB ** 2 / (nB - 1))
dof = sum_vn**2 / (vnA**2 / (nA - 1) + vnB**2 / (nB - 1))
dof[np.isnan(dof)] = 1
# Welch's t-test score calculation
server/common/compute/estimate_distribution.py
+1 -1
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@@ -97,7 +97,7 @@ def estimate_approximate_distribution(X) -> XApproximateDistribution:
if Xdata.size > CHUNKSIZE:
min_val = max_val = Xdata[0]
with concurrent.futures.ThreadPoolExecutor() as tp:
for (_min, _max) in tp.map(min_max, [Xdata[i : i + CHUNKSIZE] for i in range(0, Xdata.size, CHUNKSIZE)]):
for _min, _max in tp.map(min_max, [Xdata[i : i + CHUNKSIZE] for i in range(0, Xdata.size, CHUNKSIZE)]):
min_val = min(_min, min_val)
max_val = max(_max, max_val)