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chore: upgrade backend dependencies (#2641)

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chore: upgrade backend dependencies (#2641)
This commit is contained in:
atarashansky
2023-11-29 14:16:39 -08:00
committed by GitHub
parent 4bb9a2b834
commit 6505f6cbf5
36 changed files with 161 additions and 315 deletions
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server/data_common/data_adaptor.py
+3 -3
View File
@@ -154,7 +154,7 @@ class DataAdaptor(metaclass=ABCMeta):
parameters.update(self.parameters)
def _index_filter_to_mask(self, filter, count):
mask = np.zeros((count,), dtype=np.bool)
mask = np.zeros((count,), dtype="bool")
for i in filter:
if isinstance(i, list):
mask[i[0] : i[1]] = True
@@ -163,7 +163,7 @@ class DataAdaptor(metaclass=ABCMeta):
return mask
def _axis_filter_to_mask(self, axis, filter, count):
mask = np.ones((count,), dtype=np.bool)
mask = np.ones((count,), dtype="bool")
if "index" in filter:
mask = np.logical_and(mask, self._index_filter_to_mask(filter["index"], count))
if "annotation_value" in filter:
@@ -172,7 +172,7 @@ class DataAdaptor(metaclass=ABCMeta):
return mask
def _annotation_filter_to_mask(self, axis, filter, count):
mask = np.ones((count,), dtype=np.bool)
mask = np.ones((count,), dtype="bool")
for v in filter:
name = v["name"]
if axis == Axis.VAR:
server/data_common/matrix_loader.py
+1 -1
View File
@@ -12,7 +12,7 @@ class MatrixDataType(Enum):
class MatrixDataLoader(object):
def __init__(self, location, matrix_data_type=None, app_config=None):
""" location can be a string or DataLocator """
"""location can be a string or DataLocator"""
region_name = None if app_config is None else app_config.server_config.data_locator__s3__region_name
self.location = DataLocator(location, region_name=region_name)
if not self.location.exists():