chore: upgrade backend dependencies (#2641)

chore: upgrade backend dependencies (#2641)

server/requirements.txt

@@ -1,25 +1,22 @@
-# NOTE: If you update 'anndata' min version, also update the 'anndata_version'
-# matrix value in .github/workflows/compatibility_tests.yml
-anndata>=0.7.6 # we need to_memory(), added in 0.7.6
-boto3>=1.12.18
-click>=7.1.2
-Flask>=1.0.2,<2.3.0
-Flask-Compress>=1.4.0
-Flask-Cors>=3.0.9  # CVE-2020-25032
-Flask-RESTful>=0.3.6
-flask-server-timing>=0.1.2
-flask-talisman>=0.7.0
-flatbuffers>=1.11.0,<2.0.0 # cellxgene is not compatible with 2.0.0. Requires migration
-flatten-dict>=0.2.0
-fsspec>=0.4.4,<0.8.0
-gunicorn>=20.0.4
-h5py>=3.0.0
-numba>=0.51.2
-numpy>=1.17.5,<=1.22
-packaging>=20.0
-pandas>=1.0,!=1.1  # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446
-PyYAML>=5.4  # CVE-2020-14343
-scipy>=1.4
-requests>=2.22.0
+anndata==0.10.3
+boto3==1.29.5
+click==8.1.7
+Flask==3.0.0
+Flask-Compress==1.14
+Flask-Cors==4.0.0
+Flask-RESTful==0.3.10
+flask-server-timing==0.1.2
+flask-talisman==1.1.0
+flatbuffers==1.12
+flatten-dict==0.4.2
+fsspec==2023.10.0
+gunicorn==21.2.0
+h5py==3.10.0
+numba==0.58.1
+numpy==1.26.2
+packaging==23.2
+pandas<2.0.0
+PyYAML==6.0.1
+requests==2.31.0
 s3fs==0.4.2
-# Werkzeug>=2.2.0,<3.0.0 # our version of flask doesn't support 3.0.0
+scipy==1.11.4