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Dunitz 1685 hosted annotations (#1789)

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* save tiledb array to s3, dont cache user annotations

* Add option to disable annotation filename prompt (#1787)

Co-authored-by: Madison Dunitz <dunitzm@gmail.com>

* set tiledb default context in cxg_adaptor

Co-authored-by: maniarathi <arathi.mani@chanzuckerberg.com>
Co-authored-by: Severiano Badajoz <sbadajoz@chanzuckerberg.com>
This commit is contained in:
Madison Dunitz
2020-08-24 18:26:08 -05:00
committed by GitHub
co-authored by Madison Dunitz maniarathi Severiano Badajoz
parent 5dfe0043c3
commit 65ea1b673f
9 changed files with 71 additions and 31 deletions
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server/common/annotations/annotations.py
+2 -10
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@@ -64,15 +64,7 @@ class Annotations(metaclass=ABCMeta):
"""Write the labels (df) to a persistent storage such that it can later be read"""
pass
@abstractmethod
def update_parameters(self, parameters, data_adaptor):
"""Update configuration parameters that describe information about the annotations feature"""
params = {}
params["annotations"] = True
if self.ontology_data:
params["annotations_cell_ontology_enabled"] = True
params["annotations_cell_ontology_terms"] = self.ontology_data
else:
params["annotations_cell_ontology_enabled"] = False
parameters.update(params)
pass