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Remove cell ids from engine

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Previously I just removed them from the driver
This commit is contained in:
Charlotte Weaver
2018-07-06 10:26:33 -07:00
parent e3bf06ca61
commit 6652c07495
1 changed files with 0 additions and 11 deletions
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server/app/scanpy_engine/scanpy_engine.py
-11
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@@ -32,20 +32,9 @@ class ScanpyEngine(CXGDriver):
data_schema = parse_schema(os.path.join(data, schema)) data_schema = parse_schema(os.path.join(data, schema))
return data_schema return data_schema
def _set_cell_ids(self):
self.data.obs["cxg_cell_id"] = list(range(self.data.obs.shape[0]))
self.data.obs["cell_name"] = list(self.data.obs.index)
self.data.obs.set_index("cxg_cell_id", inplace=True)
def cells(self): def cells(self):
return list(self.data.obs.index) return list(self.data.obs.index)
def cellids(self, df=None):
if df:
return list(df.obs.index)
else:
return list(self.data.obs.index)
def genes(self): def genes(self):
return self.data.var.index.tolist() return self.data.var.index.tolist()