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Dataframe (#576)

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* initial dataframe commit

* initial dataframe port of core app

* rename variables for clarity

* remove unused import

* comment out unused code

* fix array handling bug in crossfilter dimension creation

* allow creation of empty dataframes

* handle non-existent columns

* handle non-existent columns

* revise tests for new dataframe

* comments for clarity

* comments for clarity

* generate bulk add placeholder with real gene names

* fix bug in gene name adding

* more dataframe unit tests

* fix bug - subset from current world, not universe

* put cut and pasted code into a single function

* improve caching of crossfilter

* remove cascading update bug from graph

* more performance work

* improve state handling for scatterplot

* performance optimization of critical path

* add column summarization

* dataframe utils

* add callOnceLazy

* fix tests

* minor updates found during review

* fix misspelling

* remove RESTv02 from function names

* comment cleanup

* cut/icut col parameter defaults to null

* break up large test

* improve tests and comments on dataframe at/has functions
This commit is contained in:
Bruce Martin
2019-02-22 11:31:34 -08:00
committed by GitHub
parent 57c4e9ff33
commit 6b33315cbe
29 changed files with 1798 additions and 611 deletions
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client/__tests__/util/stateManager/universe.test.js
+19 -19
View File
@@ -1,13 +1,13 @@
import _ from "lodash";
import * as Universe from "../../../src/util/stateManager/universe";
import * as Dataframe from "../../../src/util/dataframe";
import * as REST from "./sampleResponses";
describe("createUniverseFromRestV02Response", () => {
describe("createUniverseFromResponse", () => {
/*
test createUniverseFromRestV02Response - this function converts
test createUniverseFromResponse - this function converts
a set of REST 0.2 responses into a "new" Universe.
createUniverseFromRestV02Response(
createUniverseFromResponse(
configResponse,
schemaResponse,
annotationsObsResponse,
@@ -30,7 +30,7 @@ describe("createUniverseFromRestV02Response", () => {
create a universe from sample data nad validate its shape & contents
*/
const { nObs, nVar } = REST.schema.schema.dataframe;
const universe = Universe.createUniverseFromRestV02Response(
const universe = Universe.createUniverseFromResponse(
REST.config,
REST.schema,
REST.annotationsObs,
@@ -45,23 +45,23 @@ describe("createUniverseFromRestV02Response", () => {
nObs,
nVar,
schema: REST.schema.schema,
obsAnnotations: expect.any(Array),
varAnnotations: expect.any(Array),
obsNameToIndexMap: expect.any(Object),
varNameToIndexMap: expect.any(Object),
obsLayout: expect.objectContaining({
X: expect.any(Float32Array),
Y: expect.any(Float32Array)
}),
obsAnnotations: expect.any(Dataframe.Dataframe),
varAnnotations: expect.any(Dataframe.Dataframe),
obsLayout: expect.any(Dataframe.Dataframe),
summary: expect.any(Object),
varDataCache: expect.any(Object)
})
);
expect(universe.obsAnnotations).toHaveLength(nObs);
expect(_.keys(universe.obsNameToIndexMap)).toHaveLength(nObs);
expect(universe.obsLayout.X).toHaveLength(nObs);
expect(universe.obsLayout.Y).toHaveLength(nObs);
expect(universe.varAnnotations).toHaveLength(nVar);
expect(_.keys(universe.varNameToIndexMap)).toHaveLength(nVar);
expect(universe.obsAnnotations.dims).toEqual([
nObs,
REST.schema.schema.annotations.obs.length
]);
expect(universe.obsLayout.dims).toEqual([nObs, 2]);
expect(universe.obsLayout.colIndex.keys()).toEqual(["X", "Y"]);
expect(universe.varAnnotations.dims).toEqual([
nVar,
REST.schema.schema.annotations.var.length
]);
});
});