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Dataframe (#576)

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* initial dataframe commit

* initial dataframe port of core app

* rename variables for clarity

* remove unused import

* comment out unused code

* fix array handling bug in crossfilter dimension creation

* allow creation of empty dataframes

* handle non-existent columns

* handle non-existent columns

* revise tests for new dataframe

* comments for clarity

* comments for clarity

* generate bulk add placeholder with real gene names

* fix bug in gene name adding

* more dataframe unit tests

* fix bug - subset from current world, not universe

* put cut and pasted code into a single function

* improve caching of crossfilter

* remove cascading update bug from graph

* more performance work

* improve state handling for scatterplot

* performance optimization of critical path

* add column summarization

* dataframe utils

* add callOnceLazy

* fix tests

* minor updates found during review

* fix misspelling

* remove RESTv02 from function names

* comment cleanup

* cut/icut col parameter defaults to null

* break up large test

* improve tests and comments on dataframe at/has functions
This commit is contained in:
Bruce Martin
2019-02-22 11:31:34 -08:00
committed by GitHub
parent 57c4e9ff33
commit 6b33315cbe
29 changed files with 1798 additions and 611 deletions
Download Patch File Download Diff File Expand all files Collapse all files
client/src/middleware/updateCellColors.js
+6 -5
View File
@@ -41,13 +41,13 @@ const updateCellColorsMiddleware = store => next => action => {
action.type === "color by continuous metadata" ||
action.type === "color by categorical metadata";
if (!filterJustChanged || !s.controls.world.obsAnnotations) {
const obsAnnotations = _.get(s.controls, "world.obsAnnotations", null);
if (!filterJustChanged || !obsAnnotations) {
return next(
action
); /* if the cells haven't loaded or the action wasn't a color change, bail */
}
const { obsAnnotations } = s.controls.world;
let colorScale;
const colorsByRGB = new Array(obsAnnotations.length);
@@ -73,9 +73,9 @@ const updateCellColorsMiddleware = store => next => action => {
});
const key = action.colorAccessor;
const col = obsAnnotations.col(key).asArray();
for (let i = 0, len = obsAnnotations.length; i < len; i += 1) {
const obs = obsAnnotations[i];
const cat = obs[key];
const cat = col[i];
colorsByRGB[i] = colors[cat];
}
}
@@ -96,8 +96,9 @@ const updateCellColorsMiddleware = store => next => action => {
const key = action.colorAccessor;
const nonFiniteColor = parseRGB(globals.nonFiniteCellColor);
const col = obsAnnotations.col(key).asArray();
for (let i = 0, len = obsAnnotations.length; i < len; i += 1) {
const val = obsAnnotations[i][key];
const val = col[i];
if (Number.isFinite(val)) {
const c = colorScale(val);
colorsByRGB[i] = colors[c];