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Add support for anndata backed mode (#943)

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* initial cut at backed mode

* make flask multithreading conditional on debug flag

* update X access to support backed mode

* lint

* improve help message for backed mode

* fix tests

* add MatrixProxy to normalize supported matrix types

* add FAQ entry for --backed

* remove use of matrix.T

* clean up

* add ability to disable diffexp from CLI; add hueristic to detect likely slow diffexp calculation, and warn user

* fix tests

* do not print diffexp speed warning if diffexp is disabled

* tweak wording of diffexp speed messages

* add FAQ entry on --disable-diffexp

* revise heuristic for warning about slow diffexp

* use quick tooltip delay on diffexp button
This commit is contained in:
Bruce Martin
2019-10-08 11:16:07 -07:00
committed by GitHub
parent 1467357db5
commit 711f3b7048
15 changed files with 881 additions and 99 deletions
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server/requirements.txt
+1 -1
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@@ -9,7 +9,7 @@ flatbuffers>=1.10.0
fsspec>=0.4.4
numpy>=1.15.2
pandas>=0.23.1
scipy>=1.1.0
scipy>=1.3.0
tables==3.5.1
# TEMP workaround for https://github.com/theislab/scanpy/issues/832 aka h5py regression
h5py==2.9.0