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Autoformat python to fix lint errors (#1470)

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* Autoformat python to fix lint errors

* Fix lint errors not caught by black
This commit is contained in:
Matt Weiden
2020-05-12 13:19:38 -07:00
committed by GitHub
parent e55595cc55
commit 730410c5e1
10 changed files with 50 additions and 55 deletions
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server/data_anndata/anndata_adaptor.py
+5 -5
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@@ -183,13 +183,13 @@ class AnndataAdaptor(DataAdaptor):
def _validate_and_initialize(self):
if anndata_version_is_pre_070() and self.config.adaptor__anndata_adaptor__backed:
warnings.warn(
f"Use of --backed mode with anndata versions older than 0.7 will have serious "
"Use of --backed mode with anndata versions older than 0.7 will have serious "
"performance issues. Please update to at least anndata 0.7 or later."
)
# var and obs column names must be unique
if not self.data.obs.columns.is_unique or not self.data.var.columns.is_unique:
raise KeyError(f"All annotation column names must be unique.")
raise KeyError("All annotation column names must be unique.")
self._alias_annotation_names()
self._validate_data_types()
@@ -222,8 +222,8 @@ class AnndataAdaptor(DataAdaptor):
X0 = self.data.X[0, 0:1]
if sparse.isspmatrix(X0) and not sparse.isspmatrix_csc(X0):
warnings.warn(
f"Anndata data matrix is sparse, but not a CSC (columnar) matrix. "
f"Performance may be improved by using CSC."
"Anndata data matrix is sparse, but not a CSC (columnar) matrix. "
"Performance may be improved by using CSC."
)
if self.data.X.dtype != "float32":
warnings.warn(
@@ -295,7 +295,7 @@ class AnndataAdaptor(DataAdaptor):
valid_layouts.append(layout)
if len(valid_layouts) == 0:
raise PrepareError(f"No valid layout data.")
raise PrepareError("No valid layout data.")
# cap layouts to MAX_LAYOUTS
return layouts[0:MAX_LAYOUTS]