diff --git a/docs/data.md b/docs/data.md index e69de29b..b9f2def1 100644 --- a/docs/data.md +++ b/docs/data.md @@ -0,0 +1,29 @@ +--- +layout: default +title: data +description: Data +--- + + +# data vignette: how to use cellxgene prepare + +#### coming soon! + +# example datasets to use with cellxgene + +### Examination of single cells from primary human pancreas tissue +cells: 2,544 +tissue(s): pancreas +data: [GEO Series GSE81547](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81547) +paper: [Enge, Martin, et al.](https://www.cell.com/cell/fulltext/S0092-8674(17)31053-X?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS009286741731053X%3Fshowall%3Dtrue) + +### Tabula Muris +cells: 53,800 +tissue(s): muscle, pancreas, bone, large intestine, heart, brain, fat, mammary gland, tongue , diaphragm, bladder, spleen, thymus, lung , skin, liver, trachea, kidney +data: [Tabula Muris Data for Python](https://github.com/czbiohub/tabula-muris-vignettes/tree/master/data) +paper: [Tabula Muris Consortium.](https://www.nature.com/articles/s41586-018-0590-4) + +### Transcriptional profiling of 1.3 million brain cells +cells: 1,330,000 +tissue(s): brain +data: [10x Genomics](https://community.10xgenomics.com/t5/10x-Blog/Our-1-3-million-single-cell-dataset-is-ready-to-download/ba-p/276)