From 7599af252dd370eb01e4adf97233c6e8dadaf587 Mon Sep 17 00:00:00 2001 From: bmccandless Date: Mon, 21 Dec 2020 12:38:07 -0800 Subject: [PATCH] Update compatibility test (#2009) Add comment in requirements about h5py and anndata. #1963 --- .github/workflows/compatibility_tests.yml | 2 +- server/requirements.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/compatibility_tests.yml b/.github/workflows/compatibility_tests.yml index fff70efa..ccb1075e 100644 --- a/.github/workflows/compatibility_tests.yml +++ b/.github/workflows/compatibility_tests.yml @@ -29,7 +29,7 @@ jobs: strategy: matrix: python-version: [3.6, 3.7] # As of Oct 2020 Anndata is not compatible with 3.8 - anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4] + anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4, 0.7.5] test-suite: [smoke-test, smoke-test-annotations] steps: - uses: actions/checkout@v2 diff --git a/server/requirements.txt b/server/requirements.txt index 18561771..1cd9a0e2 100644 --- a/server/requirements.txt +++ b/server/requirements.txt @@ -12,7 +12,7 @@ flatbuffers>=1.11.0 flatten-dict>=0.2.0 fsspec>=0.4.4,<0.8.0 gunicorn>=20.0.4 -h5py<3.0.0 # h5py returns bytes instead of str, which breaks many assumptions +h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5 numba>=0.49.1 numpy>=1.15.0 packaging>=20.0