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add CLI tool for dataset preparation using scanpy (#364)

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* add prepare cli

* fix handling of user path

* fixes for linter

* add flags and options for handling obs and var names

* add prepare cli

* fix handling of user path

* fixes for linter

* add flags and options for handling obs and var names

* address review requests
This commit is contained in:
Jeremy Freeman
2018-10-26 16:44:41 -07:00
committed by Charlotte Weaver
parent ed66ae6e4a
commit 75ca14e4aa
2 changed files with 161 additions and 1 deletions
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server/requirements.txt
+2 -1
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@@ -1,4 +1,5 @@
anndata==0.6.11
click==6.7
Flask==0.12.4
Flask-Caching==1.4.0
Flask-Compress==1.4.0
@@ -9,4 +10,4 @@ numpy==1.14.5
pandas==0.23.1
scanpy==1.3.2
scipy==1.1.0
scikit-learn==0.19.1
scikit-learn==0.19.1