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re-implement re-embeddings (#1679)

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* fix mispelling

* re-implement re-embedding

* always load base embedding to fetch counts

* format

* lint

* fix tests

* lint

* fix accept handling

* test log

* more debug

* more

* more

* more

* more

* remove logging

* logging

* jsonify

* remove debugging logs

* lint

* clean up errors a bit

* fix issue found in PR review

* PR review changes
This commit is contained in:
Bruce Martin
2020-07-30 12:31:36 -07:00
committed by GitHub
parent bd147abb3f
commit 75cb513dd9
18 changed files with 225 additions and 179 deletions
Download Patch File Download Diff File Expand all files Collapse all files
client/src/annoMatrix/views.js
+46 -31
View File
@@ -17,59 +17,74 @@ class AnnoMatrixView extends AnnoMatrix {
}
addObsAnnoCategory(col, category) {
const o = this._clone();
o.viewOf = this.viewOf.addObsAnnoCategory(col, category);
o.schema = o.viewOf.schema;
return o;
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.addObsAnnoCategory(col, category);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
async removeObsAnnoCategory(col, category, unassignedCategory) {
const o = this._clone();
o.viewOf = await this.viewOf.removeObsAnnoCategory(
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = await this.viewOf.removeObsAnnoCategory(
col,
category,
unassignedCategory
);
o.schema = o.viewOf.schema;
return o;
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
dropObsColumn(col) {
const o = this._clone();
o.viewOf = this.viewOf.dropObsColumn(col);
o._cache.obs = this._cache.obs.dropCol(col);
o.schema = o.viewOf.schema;
return o;
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.dropObsColumn(col);
newAnnoMatrix._cache.obs = this._cache.obs.dropCol(col);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
addObsColumn(colSchema, Ctor, value) {
const o = this._clone();
o.viewOf = this.viewOf.addObsColumn(colSchema, Ctor, value);
o.schema = o.viewOf.schema;
return o;
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.addObsColumn(colSchema, Ctor, value);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
renameObsColumn(oldCol, newCol) {
const o = this._clone();
o.viewOf = this.viewOf.renameObsColumn(oldCol, newCol);
o.schema = o.viewOf.schema;
return o;
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.renameObsColumn(oldCol, newCol);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
async setObsColumnValues(col, rowLabels, value) {
const o = this._clone();
o.viewOf = await this.viewOf.setObsColumnValues(col, rowLabels, value);
o._cache.obs = this._cache.obs.dropCol(col);
o.schema = o.viewOf.schema;
return o;
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = await this.viewOf.setObsColumnValues(
col,
rowLabels,
value
);
newAnnoMatrix._cache.obs = this._cache.obs.dropCol(col);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
async resetObsColumnValues(col, oldValue, newValue) {
const o = this._clone();
o.viewOf = await this.viewOf.resetObsColumnValues(col, oldValue, newValue);
o._cache.obs = this._cache.obs.dropCol(col);
o.schema = o.viewOf.schema;
return o;
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = await this.viewOf.resetObsColumnValues(
col,
oldValue,
newValue
);
newAnnoMatrix._cache.obs = this._cache.obs.dropCol(col);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
addEmbedding(colSchema) {
const newAnnoMatrix = this._clone();
newAnnoMatrix.viewOf = this.viewOf.addEmbedding(colSchema);
newAnnoMatrix.schema = newAnnoMatrix.viewOf.schema;
return newAnnoMatrix;
}
}