merge louvain and prepare extra requires (#897)

2026-09-29 07:48:11 +08:00 · 2019-08-29 12:49:19 -07:00
parent c35f94fe6d
commit 77de22d1ed
3 changed files with 4 additions and 9 deletions
@@ -160,14 +160,7 @@ def prepare(
        sc.pp.neighbors(adata)

    def run_louvain(adata):
-        try:
-            sc.tl.louvain(adata)
-        except ModuleNotFoundError:
-            click.echo(
-                "\nWarning: louvain module is not installed, no clusters will be calculated. "
-                "To fix this please install cellxgene with the optional feature louvain enabled: "
-                "`pip install cellxgene[louvain]`"
-            )
+        sc.tl.louvain(adata)

    def run_layout(adata):
        if len(unique(adata.obs["louvain"].values)) < 10: