Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests (#2102)

* move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands
This commit is contained in:
Madison Dunitz
2021-03-26 00:27:07 -05:00
committed by GitHub
parent e6e358ddc8
commit 78c9d24ed4
425 changed files with 734 additions and 5317 deletions
+5 -5
View File
@@ -41,8 +41,8 @@ jobs:
run: |
# 1. only install the dev requirements on top of what is in the cellxgene pip package
sudo apt-get update && sudo apt-get install -y libhdf5-serial-dev
sed -i 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
sed -i 's/-r requirements.txt//' backend/server/requirements-dev.txt
pip install -r backend/server/requirements-dev.txt
# 2. install cellxgene
make pydist install-dist
# 3. install anndata
@@ -73,8 +73,8 @@ jobs:
cd cellxgene
# 1. only install the dev requirements on top of what is in the cellxgene pip package
make dev-env-client
sed -i 's/-r requirements.txt//' server/requirements-dev.txt
pip install -r server/requirements-dev.txt
sed -i 's/-r requirements.txt//' backend/server/requirements-dev.txt
pip install -r backend/server/requirements-dev.txt
# 2. install cellxgene
pip install --upgrade cellxgene
# 3. install anndata
@@ -101,7 +101,7 @@ jobs:
- name: Install dependencies
run: |
cd cellxgene
sed -i -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' server/requirements.txt
sed -i -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' backend/server/requirements.txt
make pydist install-dist dev-env
pip install git+https://github.com/theislab/anndata
- name: Tests