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Refactor czi_hosted and server into backend directory, pull common code into backend/common, refactor tests (#2102)
* move local_server -> backend/server server-> backend/czi_hosted, pull common code into backend/common update imports, tests and make commands
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@@ -41,8 +41,8 @@ jobs:
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run: |
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# 1. only install the dev requirements on top of what is in the cellxgene pip package
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sudo apt-get update && sudo apt-get install -y libhdf5-serial-dev
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sed -i 's/-r requirements.txt//' server/requirements-dev.txt
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pip install -r server/requirements-dev.txt
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sed -i 's/-r requirements.txt//' backend/server/requirements-dev.txt
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pip install -r backend/server/requirements-dev.txt
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# 2. install cellxgene
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make pydist install-dist
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# 3. install anndata
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@@ -73,8 +73,8 @@ jobs:
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cd cellxgene
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# 1. only install the dev requirements on top of what is in the cellxgene pip package
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make dev-env-client
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sed -i 's/-r requirements.txt//' server/requirements-dev.txt
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pip install -r server/requirements-dev.txt
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sed -i 's/-r requirements.txt//' backend/server/requirements-dev.txt
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pip install -r backend/server/requirements-dev.txt
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# 2. install cellxgene
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pip install --upgrade cellxgene
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# 3. install anndata
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@@ -101,7 +101,7 @@ jobs:
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- name: Install dependencies
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run: |
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cd cellxgene
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sed -i -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' server/requirements.txt
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sed -i -E 's/^anndata[>=]=[0-9]+.[0-9]+.[0-9]+$/anndata/g' backend/server/requirements.txt
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make pydist install-dist dev-env
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pip install git+https://github.com/theislab/anndata
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- name: Tests
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