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Black -- formatter for python (#508)

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* Add black

* use black to format code

* Black version
This commit is contained in:
Charlotte Weaver
2018-12-12 09:44:47 -08:00
committed by GitHub
parent a847951658
commit 83154577e4
18 changed files with 636 additions and 791 deletions
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server/test/test_api.py
+59 -80
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@@ -9,15 +9,7 @@ LOCAL_URL = "http://127.0.0.1:5005/"
VERSION = "v0.2"
URL_BASE = f"{LOCAL_URL}api/{VERSION}/"
BAD_FILTER = {
"filter": {
"obs": {
"annotation_value": [
{"name": "xyz"},
],
}
}
}
BAD_FILTER = {"filter": {"obs": {"annotation_value": [{"name": "xyz"}]}}}
class EndPoints(unittest.TestCase):
@@ -133,7 +125,7 @@ class EndPoints(unittest.TestCase):
{"name": "louvain", "values": ["NK cells", "CD8 T cells"]},
{"name": "n_counts", "min": 3000},
],
"index": [1, 99, [1000, 2000]]
"index": [1, 99, [1000, 2000]],
}
}
}
@@ -154,7 +146,7 @@ class EndPoints(unittest.TestCase):
{"name": "louvain", "values": ["NK cells", "CD8 T cells"]},
{"name": "n_counts", "min": 3000},
],
"index": [1, 99, [1000, 2000]]
"index": [1, 99, [1000, 2000]],
}
}
}
@@ -170,23 +162,9 @@ class EndPoints(unittest.TestCase):
url = f"{URL_BASE}{endpoint}"
params = {
"mode": "topN",
"set1": {
"filter": {
"obs": {"annotation_value": [
{"name": "louvain", "values": ["NK cells"]}
]
}
}
},
"set2": {
"filter": {
"obs": {"annotation_value": [
{"name": "louvain", "values": ["CD8 T cells"]}
]
}
}
},
"count": 7
"set1": {"filter": {"obs": {"annotation_value": [{"name": "louvain", "values": ["NK cells"]}]}}},
"set2": {"filter": {"obs": {"annotation_value": [{"name": "louvain", "values": ["CD8 T cells"]}]}}},
"count": 7,
}
result = self.session.post(url, json=params)
self.assertEqual(result.status_code, HTTPStatus.OK)
@@ -199,20 +177,8 @@ class EndPoints(unittest.TestCase):
params = {
"mode": "topN",
"count": 10,
"set1": {
"filter": {
"obs": {
"index": [[0, 500]]
}
}
},
"set2": {
"filter": {
"obs": {
"index": [[500, 1000]]
}
}
}
"set1": {"filter": {"obs": {"index": [[0, 500]]}}},
"set2": {"filter": {"obs": {"index": [[500, 1000]]}}},
}
result = self.session.post(url, json=params)
self.assertEqual(result.status_code, HTTPStatus.OK)
@@ -249,15 +215,7 @@ class EndPoints(unittest.TestCase):
def test_put_annotations_var(self):
endpoint = "annotations/var"
url = f"{URL_BASE}{endpoint}"
var_filter = {
"filter": {
"var": {
"annotation_value": [
{"name": "name", "values": ["ATAD3C", "RER1"]},
]
}
}
}
var_filter = {"filter": {"var": {"annotation_value": [{"name": "name", "values": ["ATAD3C", "RER1"]}]}}}
result = self.session.put(url, json=var_filter)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data = result.json()
@@ -268,15 +226,7 @@ class EndPoints(unittest.TestCase):
endpoint = "annotations/var"
query = "annotation-name=n_cells"
url = f"{URL_BASE}{endpoint}?{query}"
var_filter = {
"filter": {
"var": {
"annotation_value": [
{"name": "name", "values": ["ATAD3C", "RER1"]},
]
}
}
}
var_filter = {"filter": {"var": {"annotation_value": [{"name": "name", "values": ["ATAD3C", "RER1"]}]}}}
result = self.session.put(url, json=var_filter)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data = result.json()
@@ -335,7 +285,7 @@ class EndPoints(unittest.TestCase):
{"name": "louvain", "values": ["NK cells", "CD8 T cells"]},
{"name": "n_counts", "min": 3000},
],
"index": [1, 99, [1000, 2000]]
"index": [1, 99, [1000, 2000]],
}
}
}
@@ -349,15 +299,7 @@ class EndPoints(unittest.TestCase):
endpoint = f"data/{axis}"
url = f"{URL_BASE}{endpoint}"
header = {"Accept": "application/json"}
var_filter = {
"filter": {
"var": {
"annotation_value": [
{"name": "name", "values": ["RER1"]},
]
}
}
}
var_filter = {"filter": {"var": {"annotation_value": [{"name": "name", "values": ["RER1"]}]}}}
result = self.session.put(url, headers=header, json=var_filter)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data = result.json()
@@ -371,16 +313,44 @@ class EndPoints(unittest.TestCase):
def test_cache(self):
endpoint = "annotations/var"
url = f"{URL_BASE}{endpoint}"
f1 = {"filter": {"var": {"annotation_value": [{"name": "name",
"values": ["HLA-DRB1", "HLA-DQA1", "HLA-DQB1", "HLA-DPA1",
"HLA-DPB1", "MS4A1", "IL32", "CCL5", "CD79B",
"CD79A"]}]}}}
f1 = {
"filter": {
"var": {
"annotation_value": [
{
"name": "name",
"values": [
"HLA-DRB1",
"HLA-DQA1",
"HLA-DQB1",
"HLA-DPA1",
"HLA-DPB1",
"MS4A1",
"IL32",
"CCL5",
"CD79B",
"CD79A",
],
}
]
}
}
}
result = self.session.put(url, json=f1)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data1 = result.json()
f2 = {"filter": {"var": {"annotation_value": [{"name": "name",
"values": ["FGFBP2", "GZMA", "LTB", "PRF1", "CTSW", "GZMH",
"CCL5", "CCL4", "CST7", "NKG7"]}]}}}
f2 = {
"filter": {
"var": {
"annotation_value": [
{
"name": "name",
"values": ["FGFBP2", "GZMA", "LTB", "PRF1", "CTSW", "GZMH", "CCL5", "CCL4", "CST7", "NKG7"],
}
]
}
}
}
result = self.session.put(url, json=f2)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data2 = result.json()
@@ -393,9 +363,18 @@ class EndPoints(unittest.TestCase):
result = self.session.put(url, json=f1)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data1 = result.json()
f2 = {"filter": {"var": {"annotation_value": [{"name": "name",
"values": ["FGFBP2", "GZMA", "LTB", "PRF1", "CTSW", "GZMH",
"CCL5", "CCL4", "CST7", "NKG7"]}]}}}
f2 = {
"filter": {
"var": {
"annotation_value": [
{
"name": "name",
"values": ["FGFBP2", "GZMA", "LTB", "PRF1", "CTSW", "GZMH", "CCL5", "CCL4", "CST7", "NKG7"],
}
]
}
}
}
result = self.session.put(url, json=f2)
self.assertEqual(result.status_code, HTTPStatus.OK)
result_data2 = result.json()