diff --git a/backend/server/requirements-prepare.txt b/backend/server/requirements-prepare.txt index 254f827b..35ab4d93 100644 --- a/backend/server/requirements-prepare.txt +++ b/backend/server/requirements-prepare.txt @@ -1,2 +1,2 @@ -python-igraph +python-igraph>=0.8 louvain>=0.6 diff --git a/backend/server/requirements.txt b/backend/server/requirements.txt index b6e85890..0995eacc 100644 --- a/backend/server/requirements.txt +++ b/backend/server/requirements.txt @@ -4,7 +4,7 @@ click>=7.1.2 fastobo>=0.6.1 Flask>=1.0.2 Flask-Compress>=1.4.0 -Flask-Cors>=3.0.6 +Flask-Cors>=3.0.9 # CVE-2020-25032 Flask-RESTful>=0.3.6 flask-server-timing>=0.1.2 flask-talisman>=0.7.0 @@ -13,12 +13,13 @@ flatten-dict>=0.2.0 fsspec>=0.4.4,<0.8.0 gunicorn>=20.0.4 h5py<3.0.0 # h5py>=3.0.0 had a breaking change; there is a fix in anndata>=0.7.5 -numba>=0.49.1,<0.53.0 -numpy>=1.15.0 +jinja2>=2.11.3 # Flask sub-dependency. Added due to CVE-2020-28493 +numba>=0.51.2,<0.53.0 +numpy>=1.17.5 packaging>=20.0 pandas>=1.0,!=1.1 # pandas 1.1 breaks tests, https://github.com/pandas-dev/pandas/issues/35446 -PyYAML>=5.3 -scipy>=1.0 +PyYAML>=5.4 # CVE-2020-14343 +scipy>=1.4 requests>=2.22.0 s3fs==0.4.2 scanpy==1.4.6 # Until we move to anndata 0.7.4 scanpy needs to be pinned here