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CLI improvements (#221)
* CLI improvements * Circumvent apparent bug with subparsers.required
This commit is contained in:
committed by
Charlotte Weaver
parent
187bbfdcf7
commit
8674ad1f7f
+5
-1
@@ -73,12 +73,16 @@ def main():
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"--bind-all",
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help="Bind to all interfaces (this makes the server accessible beyond this computer)",
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action="store_true")
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subparsers = parser.add_subparsers(dest="cellxgene_command")
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subparsers = parser.add_subparsers(dest="engine")
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subparsers.required = True
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try:
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from .scanpy_engine.scanpy_engine import ScanpyEngine
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except ImportError:
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warnings.simplefilter('default', ImportWarning) # Enable ImportWarning
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warnings.warn("Scanpy engine not available", ImportWarning)
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else:
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ScanpyEngine.add_to_parser(subparsers, run_scanpy)
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if len(subparsers.choices) == 0:
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raise ImportError('Could not import any engines, see warnings above')
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args = parser.parse_args()
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args.func(args)
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