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Added initial travis config file

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Charlotte Weaver
2018-07-18 10:21:24 -07:00
parent cd7c06c822
commit 895cfcebe0
4 changed files with 27 additions and 1 deletions
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server/app/scanpy_engine/scanpy_engine.py
+1 -1
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@@ -107,7 +107,7 @@ class ScanpyEngine(CXGDriver):
:param df: from filter_cells, dataframe
:return: [cellid, x, y]
"""
getattr(sc.tl, self.graph_method)(df)
getattr(sc.tl, self.graph_method)(df, random_state=123)
graph = df.obsm["X_{graph_method}".format(graph_method=self.graph_method)]
normalized_graph = (graph - graph.min()) / (graph.max() - graph.min())
return np.hstack((df.obs["cell_name"].values.reshape(len(df.obs.index), 1), normalized_graph)).tolist()