Add undo/redo smoke tests for annotations (#1175)

* Add undo/redo tests for annotations

Fixes https://github.com/chanzuckerberg/cellxgene/issues/969

... also refactor the tests for DRY.

* Add done()

* Make e2e annotations tests safer to concurrency

* Add data-testclass for save state.

* Simplify tests and make them dependent on save state
This commit is contained in:
Matt Weiden
2020-02-26 12:10:03 -08:00
committed by GitHub
parent ded35c7252
commit 8a62c9f027
8 changed files with 254 additions and 101 deletions
+1 -1
View File
@@ -272,7 +272,7 @@ class EndPointsAnnotations(EndPoints):
def test_get_user_annotations_existing_obs_keys_fbs(self):
self._test_get_user_annotations_obs_keys_fbs(
"cluster-test", {"unassigned", "one", "two", "three", "four", "five"},
"cluster-test", {"unassigned", "one", "two", "three", "four", "five", "six", "seven"},
)
def test_put_user_annotations_obs_fbs(self):
@@ -1,5 +1,5 @@
# Annotations generated on 2020-02-07T16:48:13 using cellxgene version 0.14.0
# Input data file was ../example-dataset/pbmc3k.h5ad, which was last modified on 2019-12-17T17:13:17
# Annotations generated on 2020-02-24T23:19:31 using cellxgene version 0.14.0
# Input data file was example-dataset/pbmc3k.h5ad, which was last modified on 2019-12-17T17:13:17
index,cluster-test
AAACATACAACCAC-1,four
AAACATTGAGCTAC-1,three
@@ -27,7 +27,7 @@ AAAGTTTGTAGCGT-1,two
AAATCAACAATGCC-1,three
AAATCAACACCAGT-1,four
AAATCAACCAGGAG-1,four
AAATCAACCCTATT-1,unassigned
AAATCAACCCTATT-1,seven
AAATCAACGGAAGC-1,four
AAATCAACTCGCAA-1,four
AAATCATGACCACA-1,one
@@ -245,7 +245,7 @@ ACCCAAGAGGACAG-1,four
ACCCAAGATTCACT-1,three
ACCCACTGCGCCTT-1,two
ACCCACTGGACAGG-1,four
ACCCACTGGTTCAG-1,one
ACCCACTGGTTCAG-1,six
ACCCACTGTCGTAG-1,two
ACCCAGCTCAGAAA-1,four
ACCCAGCTGTTAGC-1,two
@@ -271,7 +271,7 @@ ACCTTTGACTCCCA-1,two
ACCTTTGAGGAACG-1,two
ACCTTTGAGGAAGC-1,one
ACGAACACCTTGTT-1,five
ACGAACTGGCTATG-1,one
ACGAACTGGCTATG-1,six
ACGAAGCTCTCCAC-1,four
ACGAAGCTCTGAGT-1,three
ACGACCCTATCTCT-1,one
@@ -545,7 +545,7 @@ AGTCTACTAGGGTG-1,two
AGTCTACTTGCATG-1,one
AGTCTTACACCACA-1,four
AGTCTTACTTCGCC-1,five
AGTCTTACTTCGGA-1,one
AGTCTTACTTCGGA-1,six
AGTGACTGCAACTG-1,one
AGTGTTCTAACCTG-1,four
AGTGTTCTATAAGG-1,four
@@ -630,7 +630,7 @@ ATCAACCTTCTCTA-1,five
ATCAACCTTTGTCT-1,five
ATCACACTTTGTCT-1,four
ATCACGGATTTCGT-1,three
ATCATCTGACACCA-1,one
ATCATCTGACACCA-1,six
ATCATGCTAGAGTA-1,five
ATCATGCTGAACCT-1,three
ATCCAGGACGCTAA-1,one
@@ -745,7 +745,7 @@ ATTAGATGTTTCAC-1,four
ATTATGGAATCTCT-1,four
ATTCAAGAACGGGA-1,four
ATTCAAGACCTTTA-1,four
ATTCAGCTCATTGG-1,one
ATTCAGCTCATTGG-1,six
ATTCCAACCATTGG-1,two
ATTCCAACTTAGGC-1,five
ATTCGACTCACTAG-1,four
@@ -946,7 +946,7 @@ CATAACCTTCTCCG-1,four
CATACTACCTCGAA-1,four
CATACTACCTGAAC-1,four
CATACTACGTACCA-1,two
CATACTTGGGTTAC-1,four
CATACTTGGGTTAC-1,seven
CATAGTCTAATCGC-1,four
CATAGTCTCACTTT-1,four
CATATAGACTAAGC-1,unassigned
@@ -1523,7 +1523,7 @@ GACCTCTGCATCAG-1,four
GACGAACTCCCACT-1,four
GACGATTGCCAATG-1,three
GACGCCGACCTTCG-1,four
GACGCTCTCTCTCG-1,one
GACGCTCTCTCTCG-1,six
GACGGCACACGGGA-1,five
GACGGCACGAGATA-1,two
GACGTAACCTATGG-1,four
@@ -1589,7 +1589,7 @@ GAGTGTTGTGGTCA-1,four
GAGTTGTGCATGGT-1,unassigned
GAGTTGTGCTGAGT-1,five
GAGTTGTGGCGAGA-1,two
GAGTTGTGGTAGCT-1,one
GAGTTGTGGTAGCT-1,six
GAGTTGTGTATGCG-1,one
GATAAGGAGAAACA-1,two
GATAAGGATTCACT-1,two
@@ -1735,7 +1735,7 @@ GCGATATGGTGTTG-1,four
GCGCACGAAGTCGT-1,four
GCGCACGACTTTAC-1,two
GCGCATCTAGGTCT-1,four
GCGCATCTGGTTAC-1,one
GCGCATCTGGTTAC-1,six
GCGCATCTTCGATG-1,four
GCGCATCTTGCTCC-1,five
GCGCATCTTTCTAC-1,four
@@ -1779,7 +1779,7 @@ GCTTAACTGCTGAT-1,four
GCTTAACTTAGACC-1,two
GCTTAACTTCAGTG-1,four
GGAACACTCACTTT-1,two
GGAACACTTCAGAC-1,one
GGAACACTTCAGAC-1,six
GGAACTACTACTTC-1,four
GGAACTTGAAGGTA-1,two
GGAACTTGAGAATG-1,four
@@ -1841,7 +1841,7 @@ GGCAATACGTTTCT-1,three
GGCACGTGGCTTAG-1,one
GGCACTCTTTTGTC-1,four
GGCATATGCTTATC-1,five
GGCATATGGGGAGT-1,one
GGCATATGGGGAGT-1,six
GGCATATGTGTGAC-1,unassigned
GGCCACGACAGAGG-1,four
GGCCAGACTGGTTG-1,four
@@ -1977,7 +1977,7 @@ GTCACCTGCCTCCA-1,four
GTCACCTGTCCCGT-1,four
GTCATACTAATCGC-1,three
GTCATACTGCGATT-1,five
GTCATACTTCGCCT-1,one
GTCATACTTCGCCT-1,six
GTCATACTTTACCT-1,five
GTCATACTTTGACG-1,four
GTCCAAGAAAAACG-1,four
@@ -2044,7 +2044,7 @@ TAAATCGATGAGGG-1,four
TAACAATGTGCCCT-1,three
TAACACCTTCGCTC-1,two
TAACACCTTCGTAG-1,two
TAACACCTTGTTTC-1,one
TAACACCTTGTTTC-1,six
TAACATGACACTAG-1,three
TAACCGGACTTACT-1,four
TAACGTCTCAACCA-1,two
@@ -2507,7 +2507,7 @@ TTACCATGTGTCTT-1,four
TTACCATGTTGTGG-1,three
TTACGACTGAGAGC-1,four
TTACGACTTGACAC-1,two
TTACGTACGTTCAG-1,one
TTACGTACGTTCAG-1,six
TTACTCGAAGAATG-1,two
TTACTCGACGCAAT-1,unassigned
TTACTCGAGGGTGA-1,four
1 # Annotations generated on 2020-02-07T16:48:13 using cellxgene version 0.14.0 # Annotations generated on 2020-02-24T23:19:31 using cellxgene version 0.14.0
2 # Input data file was ../example-dataset/pbmc3k.h5ad, which was last modified on 2019-12-17T17:13:17 # Input data file was example-dataset/pbmc3k.h5ad, which was last modified on 2019-12-17T17:13:17
3 index,cluster-test
4 AAACATACAACCAC-1,four
5 AAACATTGAGCTAC-1,three
27 AAATCAACAATGCC-1,three
28 AAATCAACACCAGT-1,four
29 AAATCAACCAGGAG-1,four
30 AAATCAACCCTATT-1,unassigned AAATCAACCCTATT-1,seven
31 AAATCAACGGAAGC-1,four
32 AAATCAACTCGCAA-1,four
33 AAATCATGACCACA-1,one
245 ACCCAAGATTCACT-1,three
246 ACCCACTGCGCCTT-1,two
247 ACCCACTGGACAGG-1,four
248 ACCCACTGGTTCAG-1,one ACCCACTGGTTCAG-1,six
249 ACCCACTGTCGTAG-1,two
250 ACCCAGCTCAGAAA-1,four
251 ACCCAGCTGTTAGC-1,two
271 ACCTTTGAGGAACG-1,two
272 ACCTTTGAGGAAGC-1,one
273 ACGAACACCTTGTT-1,five
274 ACGAACTGGCTATG-1,one ACGAACTGGCTATG-1,six
275 ACGAAGCTCTCCAC-1,four
276 ACGAAGCTCTGAGT-1,three
277 ACGACCCTATCTCT-1,one
545 AGTCTACTTGCATG-1,one
546 AGTCTTACACCACA-1,four
547 AGTCTTACTTCGCC-1,five
548 AGTCTTACTTCGGA-1,one AGTCTTACTTCGGA-1,six
549 AGTGACTGCAACTG-1,one
550 AGTGTTCTAACCTG-1,four
551 AGTGTTCTATAAGG-1,four
630 ATCAACCTTTGTCT-1,five
631 ATCACACTTTGTCT-1,four
632 ATCACGGATTTCGT-1,three
633 ATCATCTGACACCA-1,one ATCATCTGACACCA-1,six
634 ATCATGCTAGAGTA-1,five
635 ATCATGCTGAACCT-1,three
636 ATCCAGGACGCTAA-1,one
745 ATTATGGAATCTCT-1,four
746 ATTCAAGAACGGGA-1,four
747 ATTCAAGACCTTTA-1,four
748 ATTCAGCTCATTGG-1,one ATTCAGCTCATTGG-1,six
749 ATTCCAACCATTGG-1,two
750 ATTCCAACTTAGGC-1,five
751 ATTCGACTCACTAG-1,four
946 CATACTACCTCGAA-1,four
947 CATACTACCTGAAC-1,four
948 CATACTACGTACCA-1,two
949 CATACTTGGGTTAC-1,four CATACTTGGGTTAC-1,seven
950 CATAGTCTAATCGC-1,four
951 CATAGTCTCACTTT-1,four
952 CATATAGACTAAGC-1,unassigned
1523 GACGAACTCCCACT-1,four
1524 GACGATTGCCAATG-1,three
1525 GACGCCGACCTTCG-1,four
1526 GACGCTCTCTCTCG-1,one GACGCTCTCTCTCG-1,six
1527 GACGGCACACGGGA-1,five
1528 GACGGCACGAGATA-1,two
1529 GACGTAACCTATGG-1,four
1589 GAGTTGTGCATGGT-1,unassigned
1590 GAGTTGTGCTGAGT-1,five
1591 GAGTTGTGGCGAGA-1,two
1592 GAGTTGTGGTAGCT-1,one GAGTTGTGGTAGCT-1,six
1593 GAGTTGTGTATGCG-1,one
1594 GATAAGGAGAAACA-1,two
1595 GATAAGGATTCACT-1,two
1735 GCGCACGAAGTCGT-1,four
1736 GCGCACGACTTTAC-1,two
1737 GCGCATCTAGGTCT-1,four
1738 GCGCATCTGGTTAC-1,one GCGCATCTGGTTAC-1,six
1739 GCGCATCTTCGATG-1,four
1740 GCGCATCTTGCTCC-1,five
1741 GCGCATCTTTCTAC-1,four
1779 GCTTAACTTAGACC-1,two
1780 GCTTAACTTCAGTG-1,four
1781 GGAACACTCACTTT-1,two
1782 GGAACACTTCAGAC-1,one GGAACACTTCAGAC-1,six
1783 GGAACTACTACTTC-1,four
1784 GGAACTTGAAGGTA-1,two
1785 GGAACTTGAGAATG-1,four
1841 GGCACGTGGCTTAG-1,one
1842 GGCACTCTTTTGTC-1,four
1843 GGCATATGCTTATC-1,five
1844 GGCATATGGGGAGT-1,one GGCATATGGGGAGT-1,six
1845 GGCATATGTGTGAC-1,unassigned
1846 GGCCACGACAGAGG-1,four
1847 GGCCAGACTGGTTG-1,four
1977 GTCACCTGTCCCGT-1,four
1978 GTCATACTAATCGC-1,three
1979 GTCATACTGCGATT-1,five
1980 GTCATACTTCGCCT-1,one GTCATACTTCGCCT-1,six
1981 GTCATACTTTACCT-1,five
1982 GTCATACTTTGACG-1,four
1983 GTCCAAGAAAAACG-1,four
2044 TAACAATGTGCCCT-1,three
2045 TAACACCTTCGCTC-1,two
2046 TAACACCTTCGTAG-1,two
2047 TAACACCTTGTTTC-1,one TAACACCTTGTTTC-1,six
2048 TAACATGACACTAG-1,three
2049 TAACCGGACTTACT-1,four
2050 TAACGTCTCAACCA-1,two
2507 TTACCATGTTGTGG-1,three
2508 TTACGACTGAGAGC-1,four
2509 TTACGACTTGACAC-1,two
2510 TTACGTACGTTCAG-1,one TTACGTACGTTCAG-1,six
2511 TTACTCGAAGAATG-1,two
2512 TTACTCGACGCAAT-1,unassigned
2513 TTACTCGAGGGTGA-1,four