# Getting started
+
### The comprehensive guide to cellxgene
+
[The cellxgene documentation is your one-stop-shop for information about cellxgene](https://chanzuckerberg.github.io/cellxgene/)! You may be particularly interested in:
-* Seeing [what cellxgene can do](https://chanzuckerberg.github.io/cellxgene/posts/gallery)
-* Learning more about cellxgene [installation](https://chanzuckerberg.github.io/cellxgene/posts/install) and [usage](https://chanzuckerberg.github.io/cellxgene/posts/launch)
-* [Preparing your own data](https://chanzuckerberg.github.io/cellxgene/posts/prepare) for use in cellxgene
-* Checking out [our roadmap](https://chanzuckerberg.github.io/cellxgene/posts/roadmap) for future development
-* [Contributing](https://chanzuckerberg.github.io/cellxgene/posts/contribute) to cellxgene
+
+- Seeing [what cellxgene can do](https://chanzuckerberg.github.io/cellxgene/posts/gallery)
+- Learning more about cellxgene [installation](https://chanzuckerberg.github.io/cellxgene/posts/install) and [usage](https://chanzuckerberg.github.io/cellxgene/posts/launch)
+- [Preparing your own data](https://chanzuckerberg.github.io/cellxgene/posts/prepare) for use in cellxgene
+- Checking out [our roadmap](https://chanzuckerberg.github.io/cellxgene/posts/roadmap) for future development
+- [Contributing](https://chanzuckerberg.github.io/cellxgene/posts/contribute) to cellxgene
### Quick start
To install cellxgene you need Python 3.6+. We recommend [installing cellxgene into a conda or virtual environment.](https://chanzuckerberg.github.io/cellxgene/posts/install)
Install the package.
-``` bash
+
+```bash
pip install cellxgene
```
Launch cellxgene with an example [anndata](https://anndata.readthedocs.io/en/latest/) file
-``` bash
+```bash
cellxgene launch https://cellxgene-example-data.czi.technology/pbmc3k.h5ad
```
@@ -41,6 +45,17 @@ To explore more datasets already formatted for cellxgene, check out the [Demo da
see [Preparing your data](https://chanzuckerberg.github.io/cellxgene/posts/prepare) to learn more about formatting your own
data for cellxgene.
+### Supported browsers
+
+cellxgene currently supports the following browsers:
+
+- Google Chrome 61+
+- Edge 15+
+- Firefox 60+
+- Safari 10.1+
+
+Please [file an issue](https://github.com/chanzuckerberg/cellxgene/issues/new/choose) if you would like us to add support for an unsupported browser.
+
### Finding help
We'd love to hear from you!
@@ -51,6 +66,7 @@ For any errors, [report bugs on Github](https://github.com/chanzuckerberg/cellxg
# Developing with cellxgene
### Contributing
+
We warmly welcome contributions from the community! Please see our [contributing guide](https://chanzuckerberg.github.io/cellxgene/posts/contribute) and don't hesitate to open an issue or send a pull request to improve cellxgene.
This project adheres to the Contributor Covenant [code of conduct](https://github.com/chanzuckerberg/.github/blob/master/CODE_OF_CONDUCT.md). By participating, you are expected to uphold this code. Please report unacceptable behavior to opensource@chanzuckerberg.com.
@@ -64,6 +80,7 @@ This project was started with the sole goal of empowering the scientific communi
If you believe you have found a security issue, we would appreciate notification. Please send email to
+ 
+
diff --git a/client/configuration/webpack/webpack.config.dev.js b/client/configuration/webpack/webpack.config.dev.js
index 5175a08b..e0881c0a 100644
--- a/client/configuration/webpack/webpack.config.dev.js
+++ b/client/configuration/webpack/webpack.config.dev.js
@@ -1,65 +1,32 @@
-// jshint esversion: 6
const path = require("path");
const webpack = require("webpack");
const HtmlWebpackPlugin = require("html-webpack-plugin");
const FaviconsWebpackPlugin = require("favicons-webpack-plugin");
+const ScriptExtHtmlWebpackPlugin = require("script-ext-html-webpack-plugin");
+const MiniCssExtractPlugin = require("mini-css-extract-plugin");
+
+const { merge } = require("webpack-merge");
+
+const sharedConfig = require("./webpack.config.shared");
+const babelOptions = require("../babel/babel.dev");
-const src = path.resolve("src");
const fonts = path.resolve("src/fonts");
const nodeModules = path.resolve("node_modules");
-const babelOptions = require("../babel/babel.dev");
-
-module.exports = {
+const devConfig = {
mode: "development",
devtool: "eval",
- entry: ["./src/index"],
output: {
- path: path.resolve("build"),
pathinfo: true,
filename: "static/js/bundle.js",
- publicPath: "/",
},
module: {
rules: [
{
- test: /\.js$/,
- include: src,
+ test: /\.jsx?$/,
loader: "babel-loader",
options: babelOptions,
},
- {
- test: /\.css$/,
- include: src,
- exclude: [path.resolve(src, "index.css")],
- loader: [
- {
- loader: "style-loader",
- },
- {
- loader: "css-loader",
- options: {
- modules: {
- localIdentName: "[name]__[local]___[hash:base64:5]",
- },
- },
- },
- ],
- },
- {
- test: /index\.css$/,
- include: [path.resolve(src, "index.css")],
- loader: [
- {
- loader: "style-loader",
- },
- {
- loader: "css-loader",
- },
- ],
- },
-
- { test: /\.json$/, include: [src, nodeModules], loader: "json-loader" },
{
test: /\.(jpg|png|gif|eot|svg|ttf|woff|woff2|otf)$/i,
loader: "file-loader",
@@ -88,6 +55,9 @@ module.exports = {
},
},
}),
+ new MiniCssExtractPlugin({
+ filename: "static/[name].css",
+ }),
new webpack.NoEmitOnErrorsPlugin(),
new webpack.DefinePlugin({
__REACT_DEVTOOLS_GLOBAL_HOOK__: "({ isDisabled: true })",
@@ -97,5 +67,10 @@ module.exports = {
process.env.CXG_SERVER_PORT
),
}),
+ new ScriptExtHtmlWebpackPlugin({
+ async: "obsolete",
+ }),
],
};
+
+module.exports = merge(sharedConfig, devConfig);
diff --git a/client/configuration/webpack/webpack.config.prod.js b/client/configuration/webpack/webpack.config.prod.js
index 0bcee9ee..a2115e7f 100644
--- a/client/configuration/webpack/webpack.config.prod.js
+++ b/client/configuration/webpack/webpack.config.prod.js
@@ -1,32 +1,28 @@
-// jshint esversion: 6
const path = require("path");
const HtmlWebpackPlugin = require("html-webpack-plugin");
-const MiniCssExtractPlugin = require("mini-css-extract-plugin");
-const FaviconsWebpackPlugin = require("favicons-webpack-plugin");
const { CleanWebpackPlugin } = require("clean-webpack-plugin");
const TerserJSPlugin = require("terser-webpack-plugin");
const CleanCss = require("clean-css");
const OptimizeCSSAssetsPlugin = require("optimize-css-assets-webpack-plugin");
+const FaviconsWebpackPlugin = require("favicons-webpack-plugin");
+const MiniCssExtractPlugin = require("mini-css-extract-plugin");
-const CspHashPlugin = require("./cspHashPlugin");
-
-const src = path.resolve("src");
-const fonts = path.resolve("src/fonts");
-const nodeModules = path.resolve("node_modules");
+const { merge } = require("webpack-merge");
const babelOptions = require("../babel/babel.prod");
-const publicPath = "/";
+const CspHashPlugin = require("./cspHashPlugin");
+const sharedConfig = require("./webpack.config.shared");
-module.exports = {
+const fonts = path.resolve("src/fonts");
+const nodeModules = path.resolve("node_modules");
+
+const prodConfig = {
mode: "production",
bail: true,
cache: false,
- entry: ["./src/index.js"],
output: {
filename: "static/[name]-[contenthash].js",
- path: path.resolve("build"),
- publicPath,
},
optimization: {
minimize: true,
@@ -41,39 +37,10 @@ module.exports = {
module: {
rules: [
{
- test: /\.js$/,
- include: src,
+ test: /\.jsx?$/,
loader: "babel-loader",
options: babelOptions,
},
- {
- test: /\.css$/,
- include: src,
- exclude: [path.resolve(src, "index.css")],
- use: [
- MiniCssExtractPlugin.loader,
- {
- loader: "css-loader",
- options: {
- modules: {
- localIdentName: "[name]__[local]___[hash:base64:5]",
- },
- importLoaders: 1,
- },
- },
- ],
- },
- {
- test: /index\.css$/,
- include: [path.resolve(src, "index.css")],
- use: [MiniCssExtractPlugin.loader, "css-loader"],
- },
- {
- test: /\.json$/,
- include: [src, nodeModules],
- loader: "json-loader",
- exclude: /manifest.json$/,
- },
{
test: /\.(jpg|png|gif|eot|svg|ttf|woff|woff2|otf)$/i,
loader: "file-loader",
@@ -121,3 +88,5 @@ module.exports = {
maxAssetSize: 2000000,
},
};
+
+module.exports = merge(sharedConfig, prodConfig);
diff --git a/client/configuration/webpack/webpack.config.shared.js b/client/configuration/webpack/webpack.config.shared.js
new file mode 100644
index 00000000..2a8fcfdd
--- /dev/null
+++ b/client/configuration/webpack/webpack.config.shared.js
@@ -0,0 +1,74 @@
+const path = require("path");
+const fs = require("fs");
+const MiniCssExtractPlugin = require("mini-css-extract-plugin");
+const ObsoleteWebpackPlugin = require("obsolete-webpack-plugin");
+const ScriptExtHtmlWebpackPlugin = require("script-ext-html-webpack-plugin");
+
+const src = path.resolve("src");
+const nodeModules = path.resolve("node_modules");
+
+const publicPath = "/";
+
+const rawObsoleteHTMLTemplate = fs.readFileSync(
+ `${__dirname}/obsoleteHTMLTemplate.html`,
+ "utf8"
+);
+
+const obsoleteHTMLTemplate = rawObsoleteHTMLTemplate.replace(/'/g, '"');
+
+module.exports = {
+ entry: [
+ "core-js",
+ "regenerator-runtime/runtime",
+ "fastestsmallesttextencoderdecoder",
+ "whatwg-fetch",
+ "abort-controller/polyfill",
+ "./src/index",
+ ],
+ output: {
+ path: path.resolve("build"),
+ publicPath,
+ },
+ module: {
+ rules: [
+ {
+ test: /\.css$/,
+ include: src,
+ exclude: [path.resolve(src, "index.css")],
+ use: [
+ MiniCssExtractPlugin.loader,
+ {
+ loader: "css-loader",
+ options: {
+ modules: {
+ localIdentName: "[name]__[local]___[hash:base64:5]",
+ },
+ importLoaders: 1,
+ },
+ },
+ ],
+ },
+ {
+ test: /index\.css$/,
+ include: [path.resolve(src, "index.css")],
+ use: [MiniCssExtractPlugin.loader, "css-loader"],
+ },
+ {
+ test: /\.json$/,
+ include: [src, nodeModules],
+ loader: "json-loader",
+ exclude: /manifest.json$/,
+ },
+ ],
+ },
+ plugins: [
+ new ObsoleteWebpackPlugin({
+ name: "obsolete",
+ template: obsoleteHTMLTemplate,
+ promptOnNonTargetBrowser: false,
+ }),
+ new ScriptExtHtmlWebpackPlugin({
+ async: "obsolete",
+ }),
+ ],
+};
diff --git a/client/package-lock.json b/client/package-lock.json
index 545957cd..bf146854 100644
--- a/client/package-lock.json
+++ b/client/package-lock.json
@@ -4069,6 +4069,24 @@
"regenerator-runtime": "^0.13.4"
}
},
+ "@babel/runtime-corejs2": {
+ "version": "7.10.5",
+ "resolved": "https://registry.npmjs.org/@babel/runtime-corejs2/-/runtime-corejs2-7.10.5.tgz",
+ "integrity": "sha512-LJwyb1ac//Jr2zrGTTaNJhrP1wYCgVw9rzHbQPogKXCTLQ60EEWgeNtuqs6cLsq64O557SYzziCrOxNp0rRi8w==",
+ "dev": true,
+ "requires": {
+ "core-js": "^2.6.5",
+ "regenerator-runtime": "^0.13.4"
+ },
+ "dependencies": {
+ "core-js": {
+ "version": "2.6.11",
+ "resolved": "https://registry.npmjs.org/core-js/-/core-js-2.6.11.tgz",
+ "integrity": "sha512-5wjnpaT/3dV+XB4borEsnAYQchn00XSgTAWKDkEqv+K8KevjbzmofK6hfJ9TZIlpj2N0xQpazy7PiRQiWHqzWg==",
+ "dev": true
+ }
+ }
+ },
"@babel/runtime-corejs3": {
"version": "7.10.5",
"resolved": "https://registry.npmjs.org/@babel/runtime-corejs3/-/runtime-corejs3-7.10.5.tgz",
@@ -5686,6 +5704,14 @@
"resolved": "https://registry.npmjs.org/abab/-/abab-2.0.3.tgz",
"integrity": "sha512-tsFzPpcttalNjFBCFMqsKYQcWxxen1pgJR56by//QwvJc4/OUS3kPOOttx2tSIfjsylB0pYu7f5D3K1RCxUnUg=="
},
+ "abort-controller": {
+ "version": "3.0.0",
+ "resolved": "https://registry.npmjs.org/abort-controller/-/abort-controller-3.0.0.tgz",
+ "integrity": "sha512-h8lQ8tacZYnR3vNQTgibj+tODHI5/+l06Au2Pcriv/Gmet0eaj4TwWH41sO9wnHDiQsEj19q0drzdWdeAHtweg==",
+ "requires": {
+ "event-target-shim": "^5.0.0"
+ }
+ },
"accepts": {
"version": "1.3.7",
"resolved": "https://registry.npmjs.org/accepts/-/accepts-1.3.7.tgz",
@@ -6057,6 +6083,12 @@
"resolved": "https://registry.npmjs.org/assign-symbols/-/assign-symbols-1.0.0.tgz",
"integrity": "sha1-WWZ/QfrdTyDMvCu5a41Pf3jsA2c="
},
+ "ast-metadata-inferer": {
+ "version": "0.4.0",
+ "resolved": "https://registry.npmjs.org/ast-metadata-inferer/-/ast-metadata-inferer-0.4.0.tgz",
+ "integrity": "sha512-tKHdBe8N/Vq2nLAm4YPBVREVZjMux6KrqyPfNQgIbDl0t7HaNSmy8w4OyVHYg/cvyn5BW7o7pVwpjPte89Zhcg==",
+ "dev": true
+ },
"ast-types-flow": {
"version": "0.0.7",
"resolved": "https://registry.npmjs.org/ast-types-flow/-/ast-types-flow-0.0.7.tgz",
@@ -6944,6 +6976,12 @@
"lodash.uniq": "^4.5.0"
}
},
+ "caniuse-db": {
+ "version": "1.0.30001107",
+ "resolved": "https://registry.npmjs.org/caniuse-db/-/caniuse-db-1.0.30001107.tgz",
+ "integrity": "sha512-ffbV17yvEamsNm4N4dDDHdj147tWwdKw+mGyeOmvQcnu+gu455xUg8degvUOCB+fIAm7Rv3gXVn7XlTiYKymMQ==",
+ "dev": true
+ },
"caniuse-lite": {
"version": "1.0.30001039",
"resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001039.tgz",
@@ -7725,10 +7763,9 @@
"integrity": "sha1-Z29us8OZl8LuGsOpJP1hJHSPV40="
},
"core-js": {
- "version": "2.6.11",
- "resolved": "https://registry.npmjs.org/core-js/-/core-js-2.6.11.tgz",
- "integrity": "sha512-5wjnpaT/3dV+XB4borEsnAYQchn00XSgTAWKDkEqv+K8KevjbzmofK6hfJ9TZIlpj2N0xQpazy7PiRQiWHqzWg==",
- "dev": true
+ "version": "3.6.5",
+ "resolved": "https://registry.npmjs.org/core-js/-/core-js-3.6.5.tgz",
+ "integrity": "sha512-vZVEEwZoIsI+vPEuoF9Iqf5H7/M3eeQqWlQnYa8FSKKePuYTf5MWnxb5SDAzCa60b3JBRS5g9b+Dq7b1y/RCrA=="
},
"core-js-compat": {
"version": "3.6.5",
@@ -9448,6 +9485,94 @@
}
}
},
+ "eslint-plugin-compat": {
+ "version": "3.8.0",
+ "resolved": "https://registry.npmjs.org/eslint-plugin-compat/-/eslint-plugin-compat-3.8.0.tgz",
+ "integrity": "sha512-5CuWUSZXZkXLCQJBriEpndn/YWrvggDSHTpRJq++kR8GVcsWbTdp8Eh+nBA7JlrNi7ZJ/+kniOVXmn3bpnxuRA==",
+ "dev": true,
+ "requires": {
+ "ast-metadata-inferer": "^0.4.0",
+ "browserslist": "^4.12.2",
+ "caniuse-db": "^1.0.30001090",
+ "core-js": "^3.6.5",
+ "find-up": "^4.1.0",
+ "lodash.memoize": "4.1.2",
+ "mdn-browser-compat-data": "^1.0.28",
+ "semver": "7.3.2"
+ },
+ "dependencies": {
+ "browserslist": {
+ "version": "4.13.0",
+ "resolved": "https://registry.npmjs.org/browserslist/-/browserslist-4.13.0.tgz",
+ "integrity": "sha512-MINatJ5ZNrLnQ6blGvePd/QOz9Xtu+Ne+x29iQSCHfkU5BugKVJwZKn/iiL8UbpIpa3JhviKjz+XxMo0m2caFQ==",
+ "dev": true,
+ "requires": {
+ "caniuse-lite": "^1.0.30001093",
+ "electron-to-chromium": "^1.3.488",
+ "escalade": "^3.0.1",
+ "node-releases": "^1.1.58"
+ }
+ },
+ "caniuse-lite": {
+ "version": "1.0.30001107",
+ "resolved": "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001107.tgz",
+ "integrity": "sha512-86rCH+G8onCmdN4VZzJet5uPELII59cUzDphko3thQFgAQG1RNa+sVLDoALIhRYmflo5iSIzWY3vu1XTWtNMQQ==",
+ "dev": true
+ },
+ "electron-to-chromium": {
+ "version": "1.3.510",
+ "resolved": "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.510.tgz",
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+ "dev": true
+ },
+ "find-up": {
+ "version": "4.1.0",
+ "resolved": "https://registry.npmjs.org/find-up/-/find-up-4.1.0.tgz",
+ "integrity": "sha512-PpOwAdQ/YlXQ2vj8a3h8IipDuYRi3wceVQQGYWxNINccq40Anw7BlsEXCMbt1Zt+OLA6Fq9suIpIWD0OsnISlw==",
+ "dev": true,
+ "requires": {
+ "locate-path": "^5.0.0",
+ "path-exists": "^4.0.0"
+ }
+ },
+ "locate-path": {
+ "version": "5.0.0",
+ "resolved": "https://registry.npmjs.org/locate-path/-/locate-path-5.0.0.tgz",
+ "integrity": "sha512-t7hw9pI+WvuwNJXwk5zVHpyhIqzg2qTlklJOf0mVxGSbe3Fp2VieZcduNYjaLDoy6p9uGpQEGWG87WpMKlNq8g==",
+ "dev": true,
+ "requires": {
+ "p-locate": "^4.1.0"
+ }
+ },
+ "node-releases": {
+ "version": "1.1.60",
+ "resolved": "https://registry.npmjs.org/node-releases/-/node-releases-1.1.60.tgz",
+ "integrity": "sha512-gsO4vjEdQaTusZAEebUWp2a5d7dF5DYoIpDG7WySnk7BuZDW+GPpHXoXXuYawRBr/9t5q54tirPz79kFIWg4dA==",
+ "dev": true
+ },
+ "p-locate": {
+ "version": "4.1.0",
+ "resolved": "https://registry.npmjs.org/p-locate/-/p-locate-4.1.0.tgz",
+ "integrity": "sha512-R79ZZ/0wAxKGu3oYMlz8jy/kbhsNrS7SKZ7PxEHBgJ5+F2mtFW2fK2cOtBh1cHYkQsbzFV7I+EoRKe6Yt0oK7A==",
+ "dev": true,
+ "requires": {
+ "p-limit": "^2.2.0"
+ }
+ },
+ "path-exists": {
+ "version": "4.0.0",
+ "resolved": "https://registry.npmjs.org/path-exists/-/path-exists-4.0.0.tgz",
+ "integrity": "sha512-ak9Qy5Q7jYb2Wwcey5Fpvg2KoAc/ZIhLSLOSBmRmygPsGwkVVt0fZa0qrtMz+m6tJTAHfZQ8FnmB4MG4LWy7/w==",
+ "dev": true
+ },
+ "semver": {
+ "version": "7.3.2",
+ "resolved": "https://registry.npmjs.org/semver/-/semver-7.3.2.tgz",
+ "integrity": "sha512-OrOb32TeeambH6UrhtShmF7CRDqhL6/5XpPNp2DuRH6+9QLw/orhp72j87v8Qa1ScDkvrrBNpZcDejAirJmfXQ==",
+ "dev": true
+ }
+ }
+ },
"eslint-plugin-eslint-comments": {
"version": "3.2.0",
"resolved": "https://registry.npmjs.org/eslint-plugin-eslint-comments/-/eslint-plugin-eslint-comments-3.2.0.tgz",
@@ -9716,6 +9841,11 @@
"integrity": "sha1-Qa4u62XvpiJorr/qg6x9eSmbCIc=",
"dev": true
},
+ "event-target-shim": {
+ "version": "5.0.1",
+ "resolved": "https://registry.npmjs.org/event-target-shim/-/event-target-shim-5.0.1.tgz",
+ "integrity": "sha512-i/2XbnSz/uxRCU6+NdVJgKWDTM427+MqYbkQzD321DuCQJUqOuJKIA0IM2+W2xtYHdKOmZ4dR6fExsd4SXL+WQ=="
+ },
"events": {
"version": "3.1.0",
"resolved": "https://registry.npmjs.org/events/-/events-3.1.0.tgz",
@@ -10067,6 +10197,11 @@
"resolved": "https://registry.npmjs.org/fast-levenshtein/-/fast-levenshtein-2.0.6.tgz",
"integrity": "sha1-PYpcZog6FqMMqGQ+hR8Zuqd5eRc="
},
+ "fastestsmallesttextencoderdecoder": {
+ "version": "1.0.22",
+ "resolved": "https://registry.npmjs.org/fastestsmallesttextencoderdecoder/-/fastestsmallesttextencoderdecoder-1.0.22.tgz",
+ "integrity": "sha512-Pb8d48e+oIuY4MaM64Cd7OW1gt4nxCHs7/ddPPZ/Ic3sg8yVGM7O9wDvZ7us6ScaUupzM+pfBolwtYhN1IxBIw=="
+ },
"favicons": {
"version": "5.5.0",
"resolved": "https://registry.npmjs.org/favicons/-/favicons-5.5.0.tgz",
@@ -13886,6 +14021,15 @@
"safe-buffer": "^5.1.2"
}
},
+ "mdn-browser-compat-data": {
+ "version": "1.0.32",
+ "resolved": "https://registry.npmjs.org/mdn-browser-compat-data/-/mdn-browser-compat-data-1.0.32.tgz",
+ "integrity": "sha512-dqIstpk2ysqa6XcI8/fz1yB6bOKrIs61RIEE00Dj7+WHReXlGrCIiol1NBPsLUNE+HC/4y2f8va8vy1WsiCkAQ==",
+ "dev": true,
+ "requires": {
+ "extend": "3.0.2"
+ }
+ },
"mdn-data": {
"version": "2.0.4",
"resolved": "https://registry.npmjs.org/mdn-data/-/mdn-data-2.0.4.tgz",
@@ -14769,6 +14913,26 @@
"has": "^1.0.3"
}
},
+ "obsolete-web": {
+ "version": "0.5.6",
+ "resolved": "https://registry.npmjs.org/obsolete-web/-/obsolete-web-0.5.6.tgz",
+ "integrity": "sha512-rrs7kSJxOVFvvY7wuCfjg/ngXbO6q1m7Llq30RaN9WYIDH1zAoA1xWLIY39D3e5967g/NeCasI/o8ojhMMkaaA==",
+ "dev": true,
+ "requires": {
+ "@babel/runtime-corejs2": "^7.0.0"
+ }
+ },
+ "obsolete-webpack-plugin": {
+ "version": "0.5.6",
+ "resolved": "https://registry.npmjs.org/obsolete-webpack-plugin/-/obsolete-webpack-plugin-0.5.6.tgz",
+ "integrity": "sha512-oKlRW4ycxJfF/mojtpGuQwaP+J4JwIgjFuFnMgURB6AaKxAVaRwiO0oWhqYjwwJ5LxhVybOl+CnGAlhHBHBdEQ==",
+ "dev": true,
+ "requires": {
+ "browserslist": "^4.0.0",
+ "obsolete-web": "^0.5.6",
+ "webpack-sources": "^1.0.0"
+ }
+ },
"omggif": {
"version": "1.0.10",
"resolved": "https://registry.npmjs.org/omggif/-/omggif-1.0.10.tgz",
@@ -16491,9 +16655,9 @@
}
},
"regenerator-runtime": {
- "version": "0.13.5",
- "resolved": "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.13.5.tgz",
- "integrity": "sha512-ZS5w8CpKFinUzOwW3c83oPeVXoNsrLsaCoLtJvAClH135j/R77RuymhiSErhm2lKcwSCIpmvIWSbDkIfAqKQlA=="
+ "version": "0.13.7",
+ "resolved": "https://registry.npmjs.org/regenerator-runtime/-/regenerator-runtime-0.13.7.tgz",
+ "integrity": "sha512-a54FxoJDIr27pgf7IgeQGxmqUNYrcV338lf/6gH456HZ/PhX+5BcwHXG9ajESmwe6WRO0tAzRUrRmNONWgkrew=="
},
"regenerator-transform": {
"version": "0.14.5",
@@ -17147,6 +17311,14 @@
"ajv-keywords": "^3.1.0"
}
},
+ "script-ext-html-webpack-plugin": {
+ "version": "2.1.4",
+ "resolved": "https://registry.npmjs.org/script-ext-html-webpack-plugin/-/script-ext-html-webpack-plugin-2.1.4.tgz",
+ "integrity": "sha512-7MAv3paAMfh9y2Rg+yQKp9jEGC5cEcmdge4EomRqri10qoczmliYEVPVNz0/5e9QQ202e05qDll9B8zZlY9N1g==",
+ "requires": {
+ "debug": "^4.1.1"
+ }
+ },
"semver": {
"version": "5.7.1",
"resolved": "https://registry.npmjs.org/semver/-/semver-5.7.1.tgz",
@@ -19513,6 +19685,14 @@
"minimist": "^1.2.0",
"request": "^2.88.0",
"rx": "^4.1.0"
+ },
+ "dependencies": {
+ "core-js": {
+ "version": "2.6.11",
+ "resolved": "https://registry.npmjs.org/core-js/-/core-js-2.6.11.tgz",
+ "integrity": "sha512-5wjnpaT/3dV+XB4borEsnAYQchn00XSgTAWKDkEqv+K8KevjbzmofK6hfJ9TZIlpj2N0xQpazy7PiRQiWHqzWg==",
+ "dev": true
+ }
}
},
"wait-port": {
@@ -20168,6 +20348,35 @@
"uuid": "^3.3.2"
}
},
+ "webpack-merge": {
+ "version": "5.0.9",
+ "resolved": "https://registry.npmjs.org/webpack-merge/-/webpack-merge-5.0.9.tgz",
+ "integrity": "sha512-P4teh6O26xIDPugOGX61wPxaeP918QOMjmzhu54zTVcLtOS28ffPWtnv+ilt3wscwBUCL2WNMnh97XkrKqt9Fw==",
+ "requires": {
+ "clone-deep": "^4.0.1",
+ "wildcard": "^2.0.0"
+ },
+ "dependencies": {
+ "clone-deep": {
+ "version": "4.0.1",
+ "resolved": "https://registry.npmjs.org/clone-deep/-/clone-deep-4.0.1.tgz",
+ "integrity": "sha512-neHB9xuzh/wk0dIHweyAXv2aPGZIVk3pLMe+/RNzINf17fe0OG96QroktYAUm7SM1PBnzTabaLboqqxDyMU+SQ==",
+ "requires": {
+ "is-plain-object": "^2.0.4",
+ "kind-of": "^6.0.2",
+ "shallow-clone": "^3.0.0"
+ }
+ },
+ "shallow-clone": {
+ "version": "3.0.1",
+ "resolved": "https://registry.npmjs.org/shallow-clone/-/shallow-clone-3.0.1.tgz",
+ "integrity": "sha512-/6KqX+GVUdqPuPPd2LxDDxzX6CAbjJehAAOKlNpqqUpAqPM6HeL8f+o3a+JsyGjn2lv0WY8UsTgUJjU9Ok55NA==",
+ "requires": {
+ "kind-of": "^6.0.2"
+ }
+ }
+ }
+ },
"webpack-sources": {
"version": "1.4.3",
"resolved": "https://registry.npmjs.org/webpack-sources/-/webpack-sources-1.4.3.tgz",
@@ -20194,6 +20403,11 @@
"iconv-lite": "0.4.24"
}
},
+ "whatwg-fetch": {
+ "version": "3.2.0",
+ "resolved": "https://registry.npmjs.org/whatwg-fetch/-/whatwg-fetch-3.2.0.tgz",
+ "integrity": "sha512-SdGPoQMMnzVYThUbSrEvqTlkvC1Ux27NehaJ/GUHBfNrh5Mjg+1/uRyFMwVnxO2MrikMWvWAqUGgQOfVU4hT7w=="
+ },
"whatwg-mimetype": {
"version": "2.3.0",
"resolved": "https://registry.npmjs.org/whatwg-mimetype/-/whatwg-mimetype-2.3.0.tgz",
@@ -20319,6 +20533,11 @@
}
}
},
+ "wildcard": {
+ "version": "2.0.0",
+ "resolved": "https://registry.npmjs.org/wildcard/-/wildcard-2.0.0.tgz",
+ "integrity": "sha512-JcKqAHLPxcdb9KM49dufGXn2x3ssnfjbcaQdLlfZsL9rH9wgDQjUtDxbo8NE0F6SFvydeu1VhZe7hZuHsB2/pw=="
+ },
"word-wrap": {
"version": "1.2.3",
"resolved": "https://registry.npmjs.org/word-wrap/-/word-wrap-1.2.3.tgz",
diff --git a/client/package.json b/client/package.json
index 094e62f6..9c247eea 100644
--- a/client/package.json
+++ b/client/package.json
@@ -29,12 +29,23 @@
"resolutions": {
"eslint-scope": "3.7.1"
},
+ "browserslist": [
+ "Chrome > 60",
+ "Safari >= 10.1",
+ "iOS >= 10.3",
+ "Firefox >= 60",
+ "Edge >= 15",
+ "not Explorer > 0"
+ ],
"dependencies": {
"@blueprintjs/core": "^3.30.0",
"@blueprintjs/icons": "^3.19.0",
"@blueprintjs/select": "^3.13.5",
+ "abort-controller": "^3.0.0",
+ "core-js": "^3.6.5",
"d3": "^4.10.0",
"d3-scale-chromatic": "^1.5.0",
+ "fastestsmallesttextencoderdecoder": "^1.0.22",
"flatbuffers": "^1.11.0",
"fuzzysort": "^1.1.4",
"gl-mat4": "^1.2.0",
@@ -52,8 +63,12 @@
"react-redux": "^7.2.0",
"redux": "^4.0.5",
"redux-thunk": "^2.3.0",
+ "regenerator-runtime": "^0.13.7",
"regl": "^1.6.1",
- "tinyqueue": "^2.0.3"
+ "script-ext-html-webpack-plugin": "^2.1.4",
+ "tinyqueue": "^2.0.3",
+ "webpack-merge": "^5.0.9",
+ "whatwg-fetch": "^3.2.0"
},
"devDependencies": {
"@babel/core": "^7.10.5",
@@ -85,6 +100,7 @@
"eslint-config-airbnb": "^18.2.0",
"eslint-config-prettier": "^6.11.0",
"eslint-loader": "^3.0.4",
+ "eslint-plugin-compat": "^3.8.0",
"eslint-plugin-eslint-comments": "^3.2.0",
"eslint-plugin-filenames": "^1.3.2",
"eslint-plugin-import": "^2.22.0",
@@ -107,6 +123,7 @@
"json-loader": "^0.5.7",
"lint-staged": "^10.2.11",
"mini-css-extract-plugin": "^0.9.0",
+ "obsolete-webpack-plugin": "^0.5.6",
"optimize-css-assets-webpack-plugin": "^5.0.3",
"prettier": "^2.0.5",
"puppeteer": "^3.3.0",
diff --git a/client/src/index.js b/client/src/index.js
index 7f2de221..163f8abc 100644
--- a/client/src/index.js
+++ b/client/src/index.js
@@ -1,4 +1,3 @@
-// jshint esversion: 6
import React from "react";
import ReactDOM from "react-dom";
import { Provider } from "react-redux";
diff --git a/client/src/util/stateManager/matrix.js b/client/src/util/stateManager/matrix.js
index 05d4e61d..e9a1e445 100644
--- a/client/src/util/stateManager/matrix.js
+++ b/client/src/util/stateManager/matrix.js
@@ -170,11 +170,11 @@ export function encodeMatrixFBS(df) {
function promoteTypedArray(o) {
/*
- Decide what internal data type to use for the data returned from
+ Decide what internal data type to use for the data returned from
the server.
TODO - future optimization: not all int32/uint32 data series require
- promotion to float64. We COULD simply look at the data to decide.
+ promotion to float64. We COULD simply look at the data to decide.
*/
if (isFpTypedArray(o) || Array.isArray(o)) return o;
+
+
+
+ Unsupported Browser
+
+
+ cellxgene is currently supported on the following browsers
+
+
+ 
+ 
+ 
+ 
+