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This commit is contained in:
bkmartinjr
2018-05-05 13:15:10 -07:00
parent d91d42f2c4
commit 90c7daf571
62 changed files with 2398 additions and 1912 deletions
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src/globals.js
+138 -36
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@@ -1,5 +1,13 @@
// jshint esversion: 6
/* these will be either (preferably) specified or inferred */
export const categories = ["Sample.type", "Selection", "Location", "Sample.name", "Class", "Neoplastic"];
export const categories = [
"Sample.type",
"Selection",
"Location",
"Sample.name",
"Class",
"Neoplastic"
];
export const continuous = [
"Total_reads",
"Unique_reads",
@@ -18,7 +26,7 @@ export const continuous = [
"Unmapped_mismatch",
"Unmapped_other",
"Unmapped_short"
]
];
/* colors */
export const blue = "#4a90e2";
@@ -44,55 +52,149 @@ export let API = {
// prefix: "http://pbmc33k.cxg.czi.technology/api/",
// prefix: "http://api-staging.clustering.czi.technology/api/",
version: "v0.1/",
}
version: "v0.1/"
};
if (window.CELLXGENE && window.CELLXGENE.API) API = window.CELLXGENE.API;
export let datasetTitle = "";
if (window.CELLXGENE && window.CELLXGENE.datasetTitle) datasetTitle = window.CELLXGENE.datasetTitle;
if (window.CELLXGENE && window.CELLXGENE.datasetTitle)
datasetTitle = window.CELLXGENE.datasetTitle;
export const accentFont = "Georgia,Times,Times New Roman,serif";
export const maxParagraphWidth = 600;
export const maxControlsWidth = 800;
export const graphMargin = {top: 20, right: 10, bottom: 30, left: 40};
export const graphMargin = { top: 20, right: 10, bottom: 30, left: 40 };
// export const graphWidth = 1440 /* window width */ - 410 /* sidebar */ - (15 + 15) /* left right padding */ /* but responsive */;
// export const graphHeight = 500;
export const graphWidth = 960;
export const graphHeight = 960;
export const graphXScale = d3.scaleLinear()
.domain([0, 1]) /* while this is the default for d3, our data is normalized so better to be explicit */
.range([
0 + graphMargin.left,
graphWidth - graphMargin.right
]);
export const graphYScale = d3.scaleLinear()
.domain([0, 1]) /* while this is the default for d3, our data is normalized so better to be explicit */
.range([
graphHeight - graphMargin.bottom,
0 + graphMargin.top
]);
export const graphXScale = d3
.scaleLinear()
.domain([
0,
1
]) /* while this is the default for d3, our data is normalized so better to be explicit */
.range([0 + graphMargin.left, graphWidth - graphMargin.right]);
export const graphYScale = d3
.scaleLinear()
.domain([
0,
1
]) /* while this is the default for d3, our data is normalized so better to be explicit */
.range([graphHeight - graphMargin.bottom, 0 + graphMargin.top]);
export const ordinalColors = [
'#0ac115', '#c10ab6', '#c1710a', '#0a5ac1', '#c1150a', '#0ab6c1', '#5ac10a',
'#710ac1', '#0ac171', '#c10a5a', '#b6c10a', '#150ac1', '#b2ffb7', '#ffb2fa',
'#ffddb2', '#b2d4ff', '#ffb7b2', '#b2faff', '#d4ffb2', '#ddb2ff', '#b2ffdd',
'#ffb2d4', '#faffb2', '#b7b2ff', '#27a908', '#8b08a9', '#a93a08', '#0877a9',
'#a90827', '#08a98b', '#77a908', '#3a08a9', '#08a93a', '#a90877', '#a98b08',
'#0827a9', '#00ff0f', '#ff00ef', '#ff8e00', '#0070ff', '#ff0f00', '#00efff',
'#70ff00', '#8e00ff', '#00ff8e', '#ff0070', '#efff00', '#0f00ff', '#006606',
'#66005f', '#663900', '#002c66', '#660600', '#005f66', '#2c6600', '#390066',
'#006639', '#66002c', '#5f6600', '#060066', '#83ff65', '#e165ff', '#ff9565',
'#65cfff', '#ff6583', '#65ffe1', '#cfff65', '#9565ff', '#65ff95', '#ff65cf',
'#ffe165', '#6583ff', '#009909', '#99008f', '#995500', '#004399', '#990900',
'#008f99', '#439900', '#550099', '#009955', '#990043', '#8f9900', '#090099',
'#d9fecc', '#f1ccfe', '#fed7cc', '#ccf3fe', '#feccd9', '#ccfef1', '#f3fecc',
'#d7ccfe', '#ccfed7', '#feccf3', '#fef1cc', '#ccd9fe', '#47ea51', '#ea47e0',
'#eaa247', '#478fea', '#ea5147', '#47e0ea', '#8fea47', '#a247ea', '#47eaa2',
'#ea478f', '#e0ea47', '#5147ea'
]
"#0ac115",
"#c10ab6",
"#c1710a",
"#0a5ac1",
"#c1150a",
"#0ab6c1",
"#5ac10a",
"#710ac1",
"#0ac171",
"#c10a5a",
"#b6c10a",
"#150ac1",
"#b2ffb7",
"#ffb2fa",
"#ffddb2",
"#b2d4ff",
"#ffb7b2",
"#b2faff",
"#d4ffb2",
"#ddb2ff",
"#b2ffdd",
"#ffb2d4",
"#faffb2",
"#b7b2ff",
"#27a908",
"#8b08a9",
"#a93a08",
"#0877a9",
"#a90827",
"#08a98b",
"#77a908",
"#3a08a9",
"#08a93a",
"#a90877",
"#a98b08",
"#0827a9",
"#00ff0f",
"#ff00ef",
"#ff8e00",
"#0070ff",
"#ff0f00",
"#00efff",
"#70ff00",
"#8e00ff",
"#00ff8e",
"#ff0070",
"#efff00",
"#0f00ff",
"#006606",
"#66005f",
"#663900",
"#002c66",
"#660600",
"#005f66",
"#2c6600",
"#390066",
"#006639",
"#66002c",
"#5f6600",
"#060066",
"#83ff65",
"#e165ff",
"#ff9565",
"#65cfff",
"#ff6583",
"#65ffe1",
"#cfff65",
"#9565ff",
"#65ff95",
"#ff65cf",
"#ffe165",
"#6583ff",
"#009909",
"#99008f",
"#995500",
"#004399",
"#990900",
"#008f99",
"#439900",
"#550099",
"#009955",
"#990043",
"#8f9900",
"#090099",
"#d9fecc",
"#f1ccfe",
"#fed7cc",
"#ccf3fe",
"#feccd9",
"#ccfef1",
"#f3fecc",
"#d7ccfe",
"#ccfed7",
"#feccf3",
"#fef1cc",
"#ccd9fe",
"#47ea51",
"#ea47e0",
"#eaa247",
"#478fea",
"#ea5147",
"#47e0ea",
"#8fea47",
"#a247ea",
"#47eaa2",
"#ea478f",
"#e0ea47",
"#5147ea"
];