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TS migration. #2288. (#2328)

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* Added TS. Updated build and linting config. Added types.

* [ts-migrate][.] Rename files from JS/JSX to TS/TSX

Co-authored-by: ts-migrate <>

* [ts-migrate][.] Run TS Migrate

Co-authored-by: ts-migrate <>

* Corrected files mangled by ts-migrate.

* Updated lint config, minor linting.

* Re-enabled Husky.

* Updated tests and config.

* Reverted webpack devtool config.

* Removed obsolete snapshots.

* Added annotations snap.

* Updated tsconfig includes wrt linting.

* Removed ts-migrate.

Co-authored-by: Timmy Huang <tihuan@users.noreply.github.com>
This commit is contained in:
Mim Hastie
2021-07-26 20:18:17 +00:00
committed by GitHub
co-authored by ts-migrate Timmy Huang
parent 7328cbdbd5
commit 934cc5c69b
206 changed files with 4719 additions and 2085 deletions
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client/src/annoMatrix/schema.js
-88
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@@ -1,88 +0,0 @@
/*
Private helper functions related to schema
*/
import catLabelSort from "../util/catLabelSort";
import { unassignedCategoryLabel } from "../globals";
export function _getColumnSchema(schema, field, col) {
/* look up the column definition */
switch (field) {
case "obs":
if (typeof col === "object")
throw new Error("unable to get column schema by query");
return schema.annotations.obsByName[col];
case "var":
if (typeof col === "object")
throw new Error("unable to get column schema by query");
return schema.annotations.varByName[col];
case "emb":
if (typeof col === "object")
throw new Error("unable to get column schema by query");
return schema.layout.obsByName[col];
case "X":
return schema.dataframe;
default:
throw new Error(`unknown field name: ${field}`);
}
}
export function _getColumnDimensionNames(schema, field, col) {
/*
field/col may be an alias for multiple columns. Currently used to map ND
values to 1D dataframe columns for embeddings/layout. Signified by the presence
of the "dims" value in the schema.
*/
const colSchema = _getColumnSchema(schema, field, col);
if (!colSchema) {
return undefined;
}
return colSchema.dims || [col];
}
export function _schemaColumns(schema, field) {
switch (field) {
case "obs":
return Object.keys(schema.annotations.obsByName);
case "var":
return Object.keys(schema.annotations.varByName);
case "emb":
return Object.keys(schema.layout.obsByName);
default:
throw new Error(`unknown field name: ${field}`);
}
}
export function _getWritableColumns(schema, field) {
if (field !== "obs") return [];
return schema.annotations.obs.columns
.filter((v) => v.writable)
.map((v) => v.name);
}
export function _isContinuousType(schema) {
const { type } = schema;
return !(type === "string" || type === "boolean" || type === "categorical");
}
export function _normalizeCategoricalSchema(colSchema, col) {
const { type, writable } = colSchema;
if (
type === "string" ||
type === "boolean" ||
type === "categorical" ||
writable
) {
const categorySet = new Set(
col.summarizeCategorical().categories.concat(colSchema.categories ?? [])
);
if (writable && !categorySet.has(unassignedCategoryLabel)) {
categorySet.add(unassignedCategoryLabel);
}
colSchema.categories = Array.from(categorySet);
}
if (colSchema.categories) {
colSchema.categories = catLabelSort(writable, colSchema.categories);
}
return colSchema;
}