diff --git a/.github/workflows/compatibility_tests.yml b/.github/workflows/compatibility_tests.yml index f0e55f38..99a3698d 100644 --- a/.github/workflows/compatibility_tests.yml +++ b/.github/workflows/compatibility_tests.yml @@ -29,7 +29,7 @@ jobs: strategy: matrix: python-version: [3.6, 3.7, 3.8] - anndata-version: [0.6.22.post1, 0.7.1] + anndata-version: [0.7.0, 0.7.1, 0.7.2, 0.7.3, 0.7.4] test-suite: [smoke-test, smoke-test-annotations] steps: - uses: actions/checkout@v2 diff --git a/server/data_anndata/anndata_adaptor.py b/server/data_anndata/anndata_adaptor.py index 3145a833..1312a8f6 100644 --- a/server/data_anndata/anndata_adaptor.py +++ b/server/data_anndata/anndata_adaptor.py @@ -177,10 +177,10 @@ class AnndataAdaptor(DataAdaptor): ) def _validate_and_initialize(self): - if anndata_version_is_pre_070() and self.server_config.adaptor__anndata_adaptor__backed: + if anndata_version_is_pre_070(): warnings.warn( - "Use of --backed mode with anndata versions older than 0.7 will have serious " - "performance issues. Please update to at least anndata 0.7 or later." + "Use of anndata versions older than 0.7 will have serious issues. Please update to at " + "least anndata 0.7 or later." ) # var and obs column names must be unique diff --git a/server/requirements.txt b/server/requirements.txt index 2e2de8b6..d288aee8 100644 --- a/server/requirements.txt +++ b/server/requirements.txt @@ -1,4 +1,4 @@ -anndata>=0.6.20 +anndata>=0.7.0 boto3>=1.12.18 click>=7.1.2 fastobo>=0.6.1