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CLI Launch (#366)

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* Scanpy engine now required

Without the --engine param we need to error if scanpy engine cannot be imported rather than waiting for all engines

* CLI options and help matches proposal

(but not all options hooked up yet)

* Flesh out top level args

* Move computation args to engine

* CLI input file (#374)

* Fix test command

(tests still won't work)

* Input is file instead of directory
- also renamed example file

* Csweaver/debug (#376)

* Respect debug flag for logging flask calls

* Add loading messages

* max categories (#377)

* Add max categories

* Rename max_categories to category_selection_limit

* ensure whole numbers
This commit is contained in:
Charlotte Weaver
2018-10-24 19:28:59 -07:00
committed by GitHub
parent 02b2349807
commit 94f95d6565
9 changed files with 130 additions and 52 deletions
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README.md
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@@ -46,7 +46,7 @@ Started in the context of the Human Cell Atlas Consortium, cellxgene hopes to bo
**Run (with demo data)**
cellxgene --title PBMC3K scanpy example-dataset/
cellxgene launch --title PBMC3K example-dataset/pbmck3.h5ad
**Help**