- cellxgene
+ cellxgene:
{datasetTitle}
-
-
-
-
- {currentTab === "metadata" ? : null}
- {currentTab === "metadata" ? : null}
- {currentTab === "metadata" ? : null}
- {currentTab === "expression" ? : null}
+
+
+
- {currentTab === "expression" ? : null}
+ {scatterplotXXaccessor && scatterplotYYaccessor ? (
+
+ ) : null}
{currentTab === "metadata" ? : null}
diff --git a/client/src/reducers/index.js b/client/src/reducers/index.js
index 5aad19d8..5e4b7e25 100644
--- a/client/src/reducers/index.js
+++ b/client/src/reducers/index.js
@@ -3,6 +3,7 @@ import { combineReducers, createStore, applyMiddleware } from "redux";
import thunk from "redux-thunk";
import updateURLMiddleware from "../middleware/updateURLMiddleware";
import updateCellColors from "../middleware/updateCellColors";
+import { composeWithDevTools } from "redux-devtools-extension";
import config from "./config";
import differential from "./differential";
@@ -18,8 +19,9 @@ const Reducer = combineReducers({
const store = createStore(
Reducer,
- window.__REDUX_DEVTOOLS_EXTENSION__ && window.__REDUX_DEVTOOLS_EXTENSION__(),
- applyMiddleware(thunk, updateURLMiddleware, updateCellColors)
+ composeWithDevTools(
+ applyMiddleware(thunk, updateURLMiddleware, updateCellColors)
+ )
);
export default store;
diff --git a/docs/Release_Validation_Recipe.md b/docs/Release_Validation_Recipe.md
new file mode 100644
index 00000000..b8bed44d
--- /dev/null
+++ b/docs/Release_Validation_Recipe.md
@@ -0,0 +1,75 @@
+# Pre-release Validation Plan
+_This document contains a general purpose test plan for validating cellxgene prior to release_.
+
+All steps are expected to pass with no errors or malfunctions. Tester should check:
+* CLI for errors (eg, build error, engine error)
+* Browser console for errors
+* Expected CLI and/or browser UI function
+
+## [Backend Test](#backend-test)
+
+### Getting started build & install validation:
+Goal: validate build, install and example demo correctness, per Getting Started instructions.
+
+1. Clean clone of the cellxgene repo into a local directory
+2. Follow build & install instructions from the Getting Started guide
+ * Confirm no build or install errors
+ * Confirm `cellxgene --help` functions correctly
+3. Follow the example data set demo startup from Getting Started guide and confirm front-end data loads correctly
+4. Confirm all package (and other) version dependencies are correct and match
+
+### Tabula Muris
+Goal: basic functional validation of b/e functions using Tabula Muris data and the scanpy engine.
+
+1. Precondition: cellxgene built & installed.
+2. Load the Tabula Muris data set: `cellxgene --title 'T. Muris' scanpy directory-name/`
+3. Verify all metadata selectors display and have correct type/options:
+ * *TODO:* _need list of metadata and their type_
+ * ...
+4. Verify default graph display has expected layout. _need screen shot of expected layout_
+5. Verify selection controls work as expected:
+ * continuous metadata field
+ * categorical metadata field
+ * graph/lasso select
+6. Verify color by metadata type
+7. Select two cell sets and confirm differential expression compute succeeds
+6. Verify expression scatter plot is correct
+
+
+## [Front-end Compatibility Test](#frontend-compatability-test)
+Goal: verify front-end UI compatibility with a given browser variant/version/platform.
+
+1. Start back-end on PBM3K data set
+2. Load UI
+3. Verify all major UI modes/functions:
+ * Graph display
+ * Metadata selector display
+ * Title display
+ * Selection - single and multiple fields - correctly display in cluster graph
+ * Regraph & reset function correctly
+ * Differential expression calc & scatter plot display
+ * All graphs maintain consistent selection state
+ * All selection widgets (eg, continuous metadata selector) maintain correct status (consistent with graph displays)
+4. Verify overall performance is reasonable/interactive
+5. Verify no errors on CLI or browser console
+
+
+## [End-to-end Functional Test](#e2e-functional-test)
+Goal: confirm end-to-end functional behavior is as expected.
+
+### ScanPy engine
+
+1. Basic data load and display
+ * ...
+2. Select & multi-select of metadata and coordinates
+ * ...
+3. Color by metadata
+ * ...
+4. Regraph / reset
+ * ...
+5. Differential expression: scatterplot, top-N genes, etc.
+ * ...
+6. Color by expression
+ * ...
+7. Arbitrary gene expression
+ * ...