From 9604231a2af23b9ac1704a29b7a12cd9048ce9af Mon Sep 17 00:00:00 2001 From: Charlotte Weaver Date: Mon, 10 Dec 2018 14:46:55 -0800 Subject: [PATCH] Add alternative to install [louvain] extra requires (#500) * louvain install by hand * reworded --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index 4721340c..6d045fdf 100644 --- a/README.md +++ b/README.md @@ -89,6 +89,12 @@ cellxgene prepare --help pip install cellxgene[louvain] ``` +If the aforementioned optional package installation fails, you can also install these packages directly: + +``` +pip install python-igraph louvain>=0.6 +``` + ## conda and virtual environments If you use conda and want to create a conda environment for `cellxgene` you can use the following commands